XRD, UV-Vis, EXAFS, XANES, and Raman techniques have been used to study the removal of water molecules coordinated to the Cu(II) framework atoms of the novel HKUST-1 metal-organic framework. The dehydration process preserves the crystalline nature of the material, just causing a reduction of the cell volume due to the shrinking of the [Cu 2 C 4 O 8 ] cage. The removal of adsorbed H 2 O molecule makes the framework Cu(II) sites available for interaction with other probe molecules. In situ IR spectroscopy has evidenced the formation at liquid nitrogen temperature of labile Cu(II)‚‚‚CO adducts characterized by a ν(C-O) ) 2178 cm -1 and at 15 K of Cu(II)‚‚‚H 2 adducts characterized by a ν(H-H) ) 4100 cm -1 . To the best of our knowledge, we have observed for the first time a clear signal of Cu(II) carbonyl and dihydrogen complexes formed inside a crystalline microporous hosting matrix. The sinking of the oxygens of the carboxyl units, undergone by the Cu(II) framework ions in the dehydration process, is responsible for the rather low coordinative unsaturation of Cu(II). The important shielding effect of the four oxygen framework atoms is testified by the low polarization factor of the Cu(II) site probed by both CO and H 2 molecules.
Interaction of Cu ions with the amyloid-beta (Abeta) peptide is linked to the development of Alzheimer's disease; hence, determining the coordination of Cu(I) and Cu(II) ions to Abeta and the pathway of the Cu(I)(Abeta)/Cu(II)(Abeta) redox conversion is of great interest. In the present report, we use the room temperature X-ray absorption near edge structure to show that the binding sites of the Cu(I) and Cu(II) complexes are similar to those previously determined from frozen-solution studies. More precisely, the Cu(I) is coordinated by the imidazole groups of two histidine residues in a linear fashion. However, an NMR study unravels the involvement of all three histidine residues in the Cu(I) binding due to dynamical exchange between several set of ligands. The presence of an equilibrium is also responsible for the complex redox process observed by cyclic voltammetry and evidenced by a concentration-dependent electrochemical response.
Premium bonds: The pH‐dependent coordination of CuII to the Alzheimer′s disease amyloid‐β peptide has been studied by NMR spectroscopy. Several equivalent ligands are in equilibrium for CuII binding near pH 6.6 and 8.7. Fewer conformers are detected at high pH, in line with a reshuffling of the CuII binding site induced by deprotonation of the Asp1Ala2 peptide bond (see picture).
The structures of plutonium(IV) and uranium(VI) ions with a series of N,N-dialkyl amides ligands with linear and branched alkyl chains were elucidated from single-crystal X-ray diffraction (XRD), extended X-ray absorption fine structure (EXAFS), and theoretical calculations. In the field of nuclear fuel reprocessing, N,N-dialkyl amides are alternative organic ligands to achieve the separation of uranium(VI) and plutonium(IV) from highly concentrated nitric acid solution. EXAFS analysis combined with XRD shows that the coordination structure of U(VI) is identical in the solution and in the solid state and is independent of the alkyl chain: two amide ligands and four bidentate nitrate ions coordinate the uranyl ion. With linear alkyl chain amides, Pu(IV) also adopt identical structures in the solid state and in solution with two amides and four bidentate nitrate ions. With branched alkyl chain amides, the coordination structure of Pu(IV) was more difficult to establish unambiguously from EXAFS. Density functional theory (DFT) calculations were consequently performed on a series of structures with different coordination modes. Structural parameters and Debye-Waller factors derived from the DFT calculations were used to compute EXAFS spectra without using fitting parameters. By using this methodology, it was possible to show that the branched alkyl chain amides form partly outer-sphere complexes with protonated ligands hydrogen bonded to nitrate ions.
X-ray absorption spectroscopy (XAS) is an element specific spectroscopy sensitive to the local chemical and structural order of the absorber element. XAS is nowadays increasingly used for the speciation analysis of chemical elements owing to the development of new synchrotron radiation facilities worldwide. XAS can be divided into X-ray absorption near edge structure (XANES), which provides information primarily about the geometry and oxidation state, and extended X-ray absorption fine structure (EXAFS), which provides information about metal site ligation. The main advantages of the XAS method are its subatomic (angstrom) resolution, the ability to analyze almost any type of samples including amorphous (non-crystalline) materials, the possibility to analyze such materials in situ requiring minor or no sample preparation. The main limitations of XAS are its sensitivity in themM(or mg g 1) range, the difficulty to deconvolute the bulk data when the sample is composed of a mixture of structures of the absorber element, and the limited chemical selectivity of ligands to within one row of the periodic table. This tutorial will discuss the strengths and limitations of XAS and compare them to those of alternative or complementary methods such as X-ray diffraction and X-ray photoelectron spectroscopy. The tutorial will also present and discuss the specific needs in terms of sample preparation and preservation all along the process of storage and analysis, and discuss the importance of the use of cryogenic methods when XAS is applied to biological samples. Applications in life sciences are reviewed, not exhaustively, with a special emphasis on some characteristic examples. The article ends with some perspectives on future trends of XAS: micro- and nano-XAS, time-resolved XAS, and high energy resolution XAS
International audienceMolecular simulation is used to unravel the adsorption mechanisms of xenon on Ag-doped ZSM-5 zeolite. We show that silver nanoparticles, which form at the external surface of zeolite crystallites, are responsible for enhanced xenon physisorption at very low pressure. We also propose a simple model of adsorption on such composite materials made up of silver-exchanged zeolites and silver nanoparticles adsorbed at the zeolite surface. This model, which allows predicting the adsorption of other gases without any additional parameters, provides a tool to characterize the amount of reduced silver as well as the silver particle size distribution (in good agreement with transmission electron microscopy images). The presence of a majority of silver nanoparticles is further characterized by means of X-ray diffraction and X-ray Absorption Spectroscopy at the silver K edge
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