No abstract

Numerous diverse microorganisms reside in the cold desert soils of continental Antarctica, though we lack a holistic understanding of the metabolic processes that sustain them. Here, we profile the composition, capabilities, and activities of the microbial communities in 16 physicochemically diverse mountainous and glacial soils. We assembled 451 metagenome-assembled genomes from 18 microbial phyla and inferred through Bayesian divergence analysis that the dominant lineages present are likely native to Antarctica. In support of earlier findings, metagenomic analysis revealed that the most abundant and prevalent microorganisms are metabolically versatile aerobes that use atmospheric hydrogen to support aerobic respiration and sometimes carbon fixation. Surprisingly, however, hydrogen oxidation in this region was catalyzed primarily by a phylogenetically and structurally distinct enzyme, the group 1l [NiFe]-hydrogenase, encoded by nine bacterial phyla. Through gas chromatography, we provide evidence that both Antarctic soil communities and an axenic Bacteroidota isolate (Hymenobacter roseosalivarius) oxidize atmospheric hydrogen using this enzyme. Based on ex situ rates at environmentally representative temperatures, hydrogen oxidation is theoretically sufficient for soil communities to meet energy requirements and, through metabolic water production, sustain hydration. Diverse carbon monoxide oxidizers and abundant methanotrophs were also active in the soils. We also recovered genomes of microorganisms capable of oxidizing edaphic inorganic nitrogen, sulfur, and iron compounds and harvesting solar energy via microbial rhodopsins and conventional photosystems. Obligately symbiotic bacteria, including Patescibacteria, Chlamydiae, and predatory Bdellovibrionota, were also present. We conclude that microbial diversity in Antarctic soils reflects the coexistence of metabolically flexible mixotrophs with metabolically constrained specialists.

Termites are responsible for ∼1 to 3% of global methane (CH4) emissions. However, estimates of global termite CH4 emissions span two orders of magnitude, suggesting that fundamental knowledge of CH4 turnover processes in termite colonies is missing. In particular, there is little reliable information on the extent and location of microbial CH4 oxidation in termite mounds. Here, we use a one-box model to unify three independent field methods—a gas-tracer test, an inhibitor approach, and a stable-isotope technique—and quantify CH4 production, oxidation, and transport in three North Australian termite species with different feeding habits and mound architectures. We present systematic in situ evidence of widespread CH4 oxidation in termite mounds, with 20 to 80% of termite-produced CH4 being mitigated before emission to the atmosphere. Furthermore, closing the CH4 mass balance in mounds allows us to estimate in situ termite biomass from CH4 turnover, with mean biomass ranging between 22 and 86 g of termites per kilogram of mound for the three species. Field tests with excavated mounds show that the predominant location of CH4 oxidation is either in the mound material or the soil beneath and is related to species-specific mound porosities. Regardless of termite species, however, our data and model suggest that the fraction of oxidized CH4 (fox) remains well buffered due to links among consumption, oxidation, and transport processes via mound CH4 concentration. The mean fox of 0.50 ± 0.11 (95% CI) from in situ measurements therefore presents a valid oxidation factor for future global estimates of termite CH4 emissions.

The global methane (CH₄) cycle is largely driven by methanogenic archaea and methane-oxidizing bacteria (MOB), but little is known about their activity and diversity in pioneer ecosystems. We conducted a field survey in forefields of 13 receding Swiss glaciers on both siliceous and calcareous bedrock to investigate and quantify CH₄ turnover based on soil-gas CH₄ concentration profiles, and to characterize the MOB community by sequencing and terminal restriction fragment length polymorphism (T-RFLP) analysis of <i>pmoA</i>. Methane turnover was fundamentally different in the two bedrock categories. Of the 36 CH₄ concentration profiles from siliceous locations, 11 showed atmospheric CH₄ consumption at concentrations of ~1–2 μL L⁻¹ with soil-atmosphere CH₄ fluxes of –0.14 to –1.1 mg m⁻² d⁻¹. Another 11 profiles showed no apparent activity, while the remaining 14 exhibited slightly increased CH₄ concentrations of ~2–10 μL L⁻¹ , most likely due to microsite methanogenesis. In contrast, all profiles from calcareous sites suggested a substantial, yet unknown CH₄ source below our sampling zone, with soil-gas CH₄ concentrations reaching up to 1400 μL L⁻¹. Remarkably, most soils oxidized ~90 % of the deep-soil CH₄, resulting in soil-atmosphere fluxes of 0.12 to 31 mg m⁻² d⁻¹. MOB showed limited diversity in both siliceous and calcareous forefields: all identified <i>pmoA</i> sequences formed only 5 operational taxonomic units (OTUs) at the species level and, with one exception, could be assigned to either <i>Methylocystis</i> or the as-yet-uncultivated Upland Soil Cluster &gamma; (USC&gamma;). The latter dominated T-RFLP patterns of all siliceous and most calcareous samples, while <i>Methylocystis</i> dominated in 4 calcareous samples. Members of Upland Soil Cluster &alpha; (USC&alpha;) were not detected. Apparently, USC&gamma; adapted best to the oligotrophic cold climate conditions at the investigated pioneer sites

Tree stems are an important and unconstrained source of methane, yet it is uncertain whether internal microbial controls (i.e. methanotrophy) within tree bark may reduce methane emissions. Here we demonstrate that unique microbial communities dominated by methane-oxidising bacteria (MOB) dwell within bark of Melaleuca quinquenervia, a common, invasive and globally distributed lowland species. In laboratory incubations, methane-inoculated M. quinquenervia bark mediated methane consumption (up to 96.3 µmol m−2 bark d−1) and reveal distinct isotopic δ13C-CH4 enrichment characteristic of MOB. Molecular analysis indicates unique microbial communities reside within the bark, with MOB primarily from the genus Methylomonas comprising up to 25 % of the total microbial community. Methanotroph abundance was linearly correlated to methane uptake rates (R2 = 0.76, p = 0.006). Finally, field-based methane oxidation inhibition experiments demonstrate that bark-dwelling MOB reduce methane emissions by 36 ± 5 %. These multiple complementary lines of evidence indicate that bark-dwelling MOB represent a potentially significant methane sink, and an important frontier for further research.