Nickel-containing superoxide dismutases (NiSODs) represent a novel approach to the detoxification of superoxide in biology and thus contribute to the biodiversity of mechanisms for the removal of reactive oxygen species (ROS). While Ni ions play critical roles in anaerobic microbial redox (hydrogenases and CO dehydrogenase/acetyl coenzyme A synthase), they have never been associated with oxygen metabolism. Several SODs have been characterized from numerous sources and are classified by their catalytic metal as Cu/ZnSOD, MnSOD, or FeSOD. Whereas aqueous solutions of Cu(II), Mn(II), and Fe(II) ions are capable of catalyzing the dismutation of superoxide, solutions of Ni(II) are not. Nonetheless, NiSOD catalyzes the reaction at the diffusion-controlled limit (~10(9) M(-1) s(-1)). To do this, nature has created a Ni coordination unit with the appropriate Ni(III/II) redox potential (~0.090 V vs Ag/AgCl). This potential is achieved by a unique ligand set comprised of residues from the N-terminus of the protein: Cys2 and Cys6 thiolates, the amino terminus and imidazole side chain of His1, and a peptide N-donor from Cys2. Over the past several years, synthetic modeling efforts by several groups have provided insight into understanding the intrinsic properties of this unusual Ni coordination site. Such analogues have revealed information regarding the (i) electrochemical properties that support Ni-based redox, (ii) oxidative protection and/or stability of the coordinated CysS ligands, (iii) probable H(+) sources for H(2)O(2) formation, and (iv) nature of the Ni coordination geometry throughout catalysis. This review includes the results and implications of such biomimetic work as it pertains to the structure and function of NiSOD.
The kinetic isotope effect (KIE) is key to understanding reaction mechanisms in many areas of chemistry and chemical biology, including organometallic chemistry. This ratio of rate constants, k H /k D , typically falls between 1-7. However, KIEs up to 105 have been reported, and can even be so large that reactivity with deuterium is unobserved. We collect here examples of large KIEs across organometallic chemistry, in catalytic and stoichiometric reactions, along with their mechanistic interpretations. Large KIEs occur in proton transfer reactions such as protonation of organo-metallic complexes and clusters, protonolysis of metal-carbon bonds, and dihydrogen reactivity. CÀ H activation reactions with large KIEs occur with late and early transition metals, photogenerated intermediates, and abstraction by metal-oxo complexes. We categorize the mechanistic interpretations of large KIEs into the following three types: (a) proton tunneling, (b) compound effects from multiple steps, and (c) semiclassical effects on a single step. This comprehensive collection of large KIEs in organometallics provides context for future mechanistic interpretation.
Ni-containing superoxide dismutase (NiSOD) represents an unusual member of the SOD family due to the presence of oxygen-sensitive Ni-SCys bonds at its active site. Reported in this account is the synthesis and properties of the Ni complex of the NS ligand [NS] ([NS] = deprotonated form of 2-((2-mercapto-2-methylpropyl)(pyridin-2-ylmethyl)amino)-N-(2-mercaptoethyl)acetamide), namely Na[Ni(NS)] (2), as a NiSOD model that features sterically robust gem-(CH) groups on the thiolate α-C positioned trans to the carboxamide. The crystal structure of 2, coupled with spectroscopic measurements from H NMR, X-ray absorption, IR, UV-vis, and mass spectrometry (MS), reveal a planar Ni (S = 0) ion coordinated by only the NS basal donors of the NS ligand. While the structure and spectroscopic properties of 2 resemble those of NiSOD and other models, the asymmetric S ligands open up new reaction paths upon chemical oxidation. One unusual oxidation product is the planar Ni-NS complex [Ni(L)] (5; L = 2-(5,5-dimethyl-2-(pyridin-2-yl)thiazolidin-3-yl)-N-(2-mercaptoethyl)acetamide), where two-electron oxidation takes place at the substituted thiolate and py-CH carbon to generate a thiazolidine heterocycle. Electrochemical measurements of 2 reveal irreversible events wholly consistent with thiolate redox, which were identified by comparison to the Zn complex Na[Zn(NS)] (3). Although no reaction is observed between 2 and azide, reaction of 2 with superoxide produces multiple products on the basis of UV-vis and MS data, one of which is 5. Density functional theory (DFT) computations suggest that the HOMO in 2 is π* with primary contributions from Ni-dπ/S-pπ orbitals. These contributions can be modulated and biased toward Ni when electron-withdrawing groups are placed on the thiolate α-C. Analysis of the oxidized five-coordinate species 2* by DFT reveal a singly occupied spin-up (α) MO that is largely thiolate based, which supports the proposed Ni-thiolate/Ni-thiyl radical intermediates that ultimately yield 5 and other products.
The reaction of (cod)PtMe2 (cod = 1,5-cyclooctadiene) with trifluoroacetic acid to release methane is an important system because it represents the microscopic reverse of desirable methane activation and because it has an unusually large kinetic isotope effect (KIE) that has been tentatively attributed to proton tunneling. A detailed kinetic and mechanistic investigation of this system was conducted using stopped-flow and traditional time-dependent UV–vis spectroscopy, supported by NMR and density functional theory studies. Consistently large KIE values (∼14) in line with previous reports were obtained over a large range of reactant concentrations (0.1–1.6 mM (cod)PtMe2 and 3.2 mM to 6.0 M acid). At lower concentrations of acid, the KIE decreased significantly (KIE = ∼6 for 0.1 mM (cod)PtMe2 and 0.2 mM acid). This concentration-dependent KIE suggests a multistep reaction mechanism, eliminating the need to invoke proton tunneling. The reaction exhibits first-order dependence on (cod)PtMe2 and approximately second-order dependence on acid, with at least 2 equiv of acid required for complete conversion. Overall, the kinetic data indicate a multimolecular, multistep reaction mechanism for the protonolysis of (cod)PtMe2, thus ruling out the previously accepted bimolecular single-step mechanism. A mechanistic alternative consistent with the kinetic data is proposed, in which sequential oxidative addition and reductive elimination occur, and the second equivalent of acid serves to stabilize the trifluoroacetate anion in solution.
Nitric oxide reacts with a NiSOD model complex to yield a thiolate-ligated/N-nitrosated {NiNO}10 species with unusually labile Ni–NO bonds.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
hi@scite.ai
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.