Quantifying fish movements in river networks helps identify critical habitat needs and how they change with environmental conditions. Some of the challenges in tracking fish movements can be overcome with the use of passive integrated transponder (PIT) tagging and antennas. We used PIT technology to test predictions of movement behaviour for four fish species at a mainstem-tributary confluence zone in an arid-land river system. Specifically, we focused on the McElmo Creek tributary confluence with the San Juan River in southwestern Utah, USA. We quantified variation in species occurrences at this confluence zone from May 2012 to December 2015 relative to temporal and environmental conditions. We considered occurrences among species relative to tagging origins (tributary versus mainstem), season and time of day. Generally, fishes tagged in the focal tributary were more likely to be detected compared to fish tagged in the mainstem river or other tributaries. Additionally, adults were most likely to be detected across multiple years compared to subadults. Based on a Random Forests model, the best performing environmental variables for predicting seasonal detections included mainstem discharge during run-off season (razorback sucker Xyrauchen texanus), tributary discharge during monsoon season (Colorado pikeminnow Ptychocheilus lucius) and mainstem water temperature (flannelmouth sucker Catostomus latipinnis and channel catfish Ictalurus punctatus). The variable responses by endemic and introduced fishes indicate tributary habitats provide several key functions within a fish community including spawning, rearing, foraging and refuge. K E Y W O R D SCatostomus latipinnis, confluence, edge effects, movement behaviour, PIT tag, Xyrauchen texanus | INTRODUCTIONQuantifying movements of freshwater fish has been difficult due to logistical challenges of tagging and recapturing highly mobile individuals (Albanese, Angermeier, & Dorai-Raj, 2004;Gowan & Fausch, 1996;Rodriguez, 2002). Accordingly, conceptual frameworks such as the restricted movement paradigm (Gerking, 1959), long distance dispersal (Rodriguez, 2010) and confluence exchange hypothesis (Thornbrugh & Gido, 2010) that predict patterns of movement in riverine systems need testing with empirical studies. Despite the challenges studying riverine movement, advances in tagging methods now allow for freshwater fish populations within diverse communities to be studied at greater spatial and more continuous temporal scales (Cooke et al., 2013;Gowan, Young, Fausch, & Riley, 1994;Young, 2011).Sampling continuously allows increased detectability of diverse movement behaviours within and among species compared to discrete sampling events (Fausch, Torgerson, Baxter, & Li, 2002;Schlosser & Angermeier, 1995;Wiens, 2002). Intensive temporal sampling can be optimised by selecting detection sites that maximise our ability to capture the diverse inter-and intraspecific movement behaviours across time. types (Bottcher, Walsworth, Thiede, Budy, & Speas, 2013;Kiffney, Green, H...

Unforeseen interactions of dams and declining water availability have formed new obstacles to recovering endemic and endangered big‐river fishes. During a recent trend of drying climate and declining reservoir water levels in the Southwestern United States, a large waterfall has formed on two separate occasions (1989–1995 and 2001–present) in the transition zone between the San Juan River and Lake Powell reservoir because of deposited sediments. Since recovery plans for two large‐bodied endangered fish species, razorback sucker (Xyrauchen texanus) and Colorado pikeminnow (Ptychocheilus lucius), include annual stockings in the San Juan River, this waterfall potentially blocks upstream movement of individuals that moved downstream from the river into the reservoir. To quantify the temporal variation in abundance of endangered fishes aggregating downstream of the waterfall and determine population demographics, we remotely monitored and sampled in spring 2015, 2016, and 2017 when these fish were thought to move upstream to spawn. Additionally, we used an open population model applied to tagged fish detected in 2017 to estimate population sizes. Colorado pikeminnow were so infrequently encountered (<30 individuals) that population estimates were not performed. Razorback sucker captures from sampling (335), and detections from remote monitoring (943) showed high abundance across all 3 years. The razorback sucker population estimate for 2017 alone was 755 individuals and, relative to recent population estimates ranging from ~2,000 to ~4,000 individuals, suggests that a substantial population exists seasonally downstream of this barrier. Barriers to fish movement in rivers above reservoirs are not unique; thus, the formation of this waterfall exemplifies how water development and hydrology can interact to cause unforeseen changes to a riverscape.

Reservoirs and associated river fragments are novel ecosystems not experienced by fishes in their evolutionary history, yet they are now commonplace across the globe. Understanding how fishes use these novel habitats is vital to conservation efforts in contemporary riverscapes. Movement patterns of the endangered razorback sucker (Xyrauchen texanus) synthesized from tagging efforts in the upper Colorado River basin, USA, illustrate the applications of tagging technology and data sharing by multiple agencies to better understand the spatial ecology of large river fishes. Tagging studies between 2014 and 2018 in Lake Powell and its two main tributary rivers, the Colorado (unfragmented) and San Juan (waterfall‐fragmented), were used to quantify movement of razorback sucker within this river–reservoir habitat complex. In addition, facilitated translocations of fish upstream of a waterfall barrier in the San Juan River were assessed in 2016–2017. Extensive movement of fish occurred within and across river and reservoir habitats. Of 722 fish captured in the Colorado River arm of Lake Powell, 36% of re‐encounters occurred upstream in the Colorado or Green rivers, or fish dispersed through the reservoir and were detected in the San Juan River arm. Fourteen fish moved more than 600 km. In the San Juan arm of the reservoir, 29% and 20% of fish in 2017 and 2018, respectively, had moved ~30–40 km upstream below the waterfall in the San Juan River within a year. In 2016–2017, 303 fish were translocated upstream of the waterfall into the San Juan River, but 80% were re‐encountered downstream of the waterfall within a year. Long‐distance movements by razorback sucker were common within and among rivers and reservoirs illustrating how large river fish, in general, might maintain population connectivity in highly altered ecosystems.

The growth of age-0 Arctic grayling Thymallus arcticus in two adjacent watersheds with differing numbers of lakes was compared. Age-0 Arctic grayling grew faster in the watershed with numerous lakes (eight) than in the watershed with only one lake. The presence of lakes along the stream courses in both watersheds decreased stream temperatures in the spring but increased temperatures in summer. The size of substrates was greater in streams below lakes than in inlet stream reaches. Growth rates of discrete populations of age-0 Arctic grayling were positively related to stream temperature. No relationship between fish growth rate and the biomass of invertebrate drift was apparent. We conclude that the summer increase in stream temperatures attributable to the presence of lakes resulted in increased growth of Arctic grayling in the watershed with numerous lakes. A simulation model of the temperature-dependent growth of age-0 Arctic grayling indicated that the abundance of lakes in one of the watersheds enhanced the potential production of Arctic grayling almost sixfold.

The extent of fish movements in contemporary river networks can depend on spatial position relative to attractive features that may provide food and refuge, such as tributary mouths, or restrictive features, such as barriers. From the San Juan River basin in New Mexico and Utah, we integrated remote summertime PIT tag detections at two tributary mouths (McElmo Creek and Chaco Wash) with main‐stem recapture data from 2012 to 2015 to determine if two endangered species, Colorado Pikeminnow Ptychocheilus lucius and Razorback Sucker Xyrauchen texanus, differed in tributary use, demography, and seasonal ranges. Razorback Suckers were more abundantly detected (n = 266 individuals) and recaptured (n = 145) than were Colorado Pikeminnows (n = 96 detected; n = 55 recaptured). Despite the San Juan River flowing uninterrupted between the tributary mouths, individuals of each species separated into tributary‐specific groups. Razorback Suckers had very similar sizes and ages at each tributary, reflecting a homogeneous augmented population. Colorado Pikeminnows separated into tributary‐specific groups of either adult (Chaco Wash) or subadult (McElmo Creek) fish based on total length and age. Analyses suggested that fish size was a significant factor explaining the extent of seasonal ranges for both species. Although the ranges of both species exhibited a tributary effect, this effect was more significant in explaining Razorback Sucker ranges than Colorado Pikeminnow ranges, which were explained best by season. Understanding how mobile species interact with attractive and inhibitive river features can help managers identify potential sampling biases along with possible consequences of spatially structured populations. Managers should consider extending sampling upstream of barriers, installing additional permanent antenna arrays, and maintaining perennial flows in these tributaries.