Chemical reactions may take place in a pure phase of gas or liquid or at the interface of two phases (gas-solid or liquid-solid). Recently, the emerging field of "surface-confined coupling reactions" has attracted intensive attention. In this process, reactants, intermediates, and products of a coupling reaction are adsorbed on a solid-vacuum or a solid-liquid interface. The solid surface restricts all reaction steps on the interface, in other words, the reaction takes place within a lower-dimensional, for example, two-dimensional, space. Surface atoms that are fixed in the surface and adatoms that move on the surface often activate the surface-confined coupling reactions. The synergy of surface morphology and activity allow some reactions that are inefficient or prohibited in the gas or liquid phase to proceed efficiently when the reactions are confined on a surface. Over the past decade, dozens of well-known "textbook" coupling reactions have been shown to proceed as surface-confined coupling reactions. In most cases, the surface-confined coupling reactions were discovered by trial and error, and the reaction pathways are largely unknown. It is thus highly desirable to unravel the mechanisms, mechanisms of surface activation in particular, of the surface-confined coupling reactions. Because the reactions take place on surfaces, advanced surface science techniques can be applied to study the surface-confined coupling reactions. Among them, scanning tunneling microscopy (STM) and X-ray photoelectron spectroscopy (XPS) are the two most extensively used experimental tools. The former resolves submolecular structures of individual reactants, intermediates, and products in real space, while the latter monitors the chemical states during the reactions in real time. Combination of the two methods provides unprecedented spatial and temporal information on the reaction pathways. The experimental findings are complemented by theoretical modeling. In particular, density-functional theory (DFT) transition-state calculations have been used to shed light on reaction mechanisms and to unravel the trends of different surface materials. In this Account, we discuss recent progress made in two widely studied surface-confined coupling reactions, aryl-aryl (Ullmann-type) coupling and alkyne-alkyne (Glaser-type) coupling, and focus on surface activation effects. Combined experimental and theoretical studies on the same reactions taking place on different metal surfaces have clearly demonstrated that different surfaces not only reduce the reaction barrier differently and render different reaction pathways but also control the morphology of the reaction products and, to some degree, select the reaction products. We end the Account with a list of questions to be addressed in the future. Satisfactorily answering these questions may lead to using the surface-confined coupling reactions to synthesize predefined products with high yield.

On-surface polymerization represents a novel bottom-up approach for producing macromolecular structures. To date, however, most of the structures formed using this method exhibit a broad size distribution and are disorderly adsorbed on the surface. Here we demonstrate a strategy of using metal-directed template to control the on-surface polymerization process. We chose a bifunctional compound which contains pyridyl and bromine end groups as the precursor. Linear template afforded by pyridyl-Cu-pyridyl coordination effectively promoted Ullmann coupling of the monomers on a Au(111) surface. Taking advantage of efficient topochemical enhancement owing to the conformation flexibility of the Cu-pyridyl bonds, macromolecular porphyrin structures that exhibit a narrow size distribution were synthesized. We used scanning tunneling microscopy and kinetic Monte Carlo simulation to gain insights into the metal-directed polymerization at the single molecule level. The results reveal that the polymerization process profited from the rich chemistry of Cu which catalyzed the C-C bond formation, controlled the size of the macromolecular products, and organized the macromolecules in a highly ordered manner on the surface.

The coordination assembly of 1,3,5-trispyridylbenzene with Cu on a Au(111) surface has been investigated by scanning tunneling microscopy under ultrahigh vacuum conditions. An open two-dimensional (2D) metal-organic network of honeycomb structure is formed as the 2D network covers partial surface. Upon the 2D network coverage of the entire surface, further increment of molecular density on the surface results in a multistep nonreversible structural transformation in the self-assembly. The new phases consist of metal-organic networks of pentagonal, rhombic, zigzag, and eventually triangular structures. In addition to the structural change, the coordination configuration also undergoes a change from the two-fold Cu-pyridyl binding in the honeycomb, pentagonal, rhombic and zigzag structures to the three-fold Cu-pyridyl coordination in the triangular structure. As the increment of molecular packing density on the surface builds up intrinsic in-plane compression pressure in the 2D space, the transformation of the structure, as well as the coordination binding mode, is attributed to the in-plane compression pressure. The quantitative structural analysis of the various phases upon molecular density increment allows us to construct a phase diagram of network structures as a function of the in-plane compression.

We investigated the thermodynamic processes of two-dimensional (2D) metallo-supramolecular self-assembly at molecular resolution using scanning tunneling microscopy and variable-temperature low-energy electron diffraction. On a Au(111) substrate, tripyridyl ligands coordinated with Cu in a twofold Cu-pyridyl binding mode or with Fe in a threefold Fe-pyridyl binding mode, forming a 2D open network structure in each case. The network structures exhibited remarkable thermal stability (600 K for the Cu-coordinated network and 680 K for the Fe-coordinated network). The Fe-pyridyl binding was selected thermodynamically as well as kinetically in self-assembly involving both modes. The selectivity can be effectively suppressed in a specifically designed self-assembly route.

Using a scanning tunneling microscope, we measured high-bias conductance of single polyporphyrin molecular wires with lengths from 1.3 to 13 nm. We observed several remarkable transport characteristics, including multiple sharp conductance peaks, conductances as high as 20 nS in wires with lengths of >10 nm, and nearly length-independent conductance (attenuation <0.001 Å(-1)). We carried out first-principles simulations on myriad metal-molecule-metal junctions. The simulations revealed that the measured conductance is coherent resonant transport via a delocalized molecular orbital.