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Pantanodon, containing two African extant species and four European fossil species, for a long time had an uncertain position among the Cyprinodontiformes due to its peculiar morphology. In the last decades, Pantanodon has been considered closely related to African lamp-eyes of the Procatopodinae clade, which is contained in the Poeciliidae, a teleost fish family with a broad geographical distribution in Africa and the Americas. However, recent molecular studies have challenged the monophyly of the Poeciliidae, but the position of Pantanodon remained uncertain. We analysed one mitochondrial (COI) and five nuclear loci (GLYT1, MYH6, SH3PX3, RAG1, ENC1), a total of 5,083 bp, for 27 cyprinodontiform taxa and 6 outgroups, obtaining a well-supported phylogeny, in which the monophyly of Poeciliidae, as supported by morphological data is refuted. Pantanodon stuhlmanni, the type species of the genus, is recovered as the most basal cyprinodontoid lineage and other African taxa formerly placed in Poeciliidae are highly supported as more closely related to European non-poeciliid cyprinodontoid genera than to other taxa. Since the present tree topology is not compatible with the present classification of the Cyprinodontoidei, a new classification using available family group names is provided: Pantanodontidae is used for Pantanodon; Procatopodidae, for the African lamp-eye clade; and Fluviphylacidae, for the South American genus Fluviphylax. Poeciliidae is restricted to the American livebearers, hence restoring the classification generally used prior to 1981.

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Members of the Hypsolebias antenori species group comprise a diverse clade of morphologically similar seasonal killifishes occurring in a vast region of the semi‐arid savannah of northeastern Brazil. The present paper focuses on an assemblage of three allopatric cryptic species (H. antenori from isolated coastal river drainages, Hypsolebias igneus from the São Francisco River basin and Hypsolebias coamazonicus sp. nov. from the Parnaíba River basin) sharing almost identical colour patterns, including the presence of an orangish red anal fin in males, thus herein named as the red‐finned assemblage. A tree‐based approach using mt‐DNA (cytochrome b) supports delimitation of all three species, but indicates that the red‐finned assemblage is paraphyletic – H. igneus and H. coamazonicus are closely related to Hypsolebias nudiorbitatus, whereas H. antenori is the sister group to a clade comprising all 13 species of the H. antenori group included in the analysis. Morphological characters are useful to diagnose species, but are not informative for most clades highly supported by molecular data. H. coamazonicus is distinguished from all other congeners by the possession of a dark grey or black stripe on the dorsal fin in males. The basal position of H. antenori is related to uplift episodes involving the Araripe‐Borborema plateau during the Miocene, which isolated the coastal area inhabited by H. antenori from the remaining areas of the Caatinga. The sister group relationship between H. igneus and H. coamazonicus is attributed to a past connection between the São Francisco and Paranaíba River until the Tertiary.