SignificanceWe conducted a systematic, high-resolution analysis of bottom trawl fishing footprints for 24 regions on continental shelves and slopes of five continents and New Zealand. The proportion of seabed trawled varied >200-fold among regions (from 0.4 to 80.7% of area to a depth of 1,000 m). Within 18 regions, more than two-thirds of seabed area remained untrawled during study periods of 2–6 years. Relationships between metrics of total trawling activity and footprint were strong and positive, providing a method to estimate trawling footprints for regions where high-resolution data are not available. Trawling footprints were generally smaller in regions where fisheries met targets for exploitation rates, implying collateral environmental benefits of effective fisheries management.

The NansClim project (2010–2013) represented a regional collaboration to assess the effects of climate on Benguela dynamics. Based on in situ (since the 1960s in Namibia and South Africa and 1985 in Angola) and satellite (since the 1980s) observations, the project focussed on four subsystems, namely the Angola subtropical, northern Benguela upwelling, southern Benguela upwelling and Agulhas Bank. This contribution summarizes the findings for selected key questions, ranging from changes in the physico‐chemical habitats, plankton, pelagic and demersal fish communities, to cross‐cutting evaluation at subsystem and regional scales. The results underline the overriding importance to of considering the combined effects of climate and fishing as drivers of the dynamics of the ecosystem components. Each subsystem currently continues to function largely as a separate entity as described in earlier reviews. However, some changes have been observed across several subsystems, e.g., a coherent shift from one relatively stable period to another occurred in the northern and southern Benguela in the mid‐1990s. Future climate change could weaken the boundaries between the four subystems. The findings underline the need for continued regional research collaboration and regional surveys focussed at ecosystem, rather than resource, assessment. Our conclusions include implications for ecosystem‐based fisheries management, and recommendations for future regional research.

Hypoxia [O2 < 2.0 mL L−1 (87 μmol kg−1)] and severely hypoxic water masses [O2 < 0.5 mL L−1 (21.8 μmol kg−1)] are increasing in coastal marine ecosystems due to eutrophication and warming. Here, we investigate the response of the suboxic-tolerant endemic fish, Sufflogobius bibarbatus, to variations in the thermal and oxygen environment, as well as to predation pressure, using 22 yr worth of satellite and in situ data. We show that environmental variation and predation pressure affect the goby population, which has expanded over the last decade while that of horse mackerel has contracted. These changes co-occurred with a general warming in the north and central shelf areas (north of 24.5°S). Spring warming positively affected both goby and hake abundances, but not the horse mackerel, suggesting different responses to surface temperature. The goby habitat contracted when predators were abundant, particularly in the north, which is the fringe of its distributional area. The implications of the differential tolerance of gobies and their predators for climate variations are discussed.

Environmental gradients have been shown to disrupt gene flow in marine species, yet their influence in structuring populations at depth remains poorly understood. The Cape hakes (Merluccius paradoxus and M. capensis) are demersal species co-occurring in the Benguela Current system, where decades of intense fishing resulted in severely depleted stocks in the past. Previous studies identified conflicting mtDNA genetic substructuring patterns and thus contrasting evolutionary trajectories for both species. Using 10 microsatellite loci, the control region of mtDNA and employing a seascape genetics approach, we investigated genetic connectivity and the impact of prolonged exploitation in the two species, which are characterized by different patterns of fishing pressure. Three consecutive years were sampled covering the entire distribution (N = 2100 fishes). Despite large estimated population sizes, both species exhibited low levels of contemporary genetic diversity (0.581 < H < 0.692), implying that fishing has had a significant impact on their genetic composition and evolutionary trajectories. Further, for M. paradoxus, significant temporal, but not spatial, divergence points to the presence of genetic chaotic patchiness. In contrast, M. capensis exhibited a clear latitudinal cline in genetic differentiation between Namibia and South Africa (F = 0.063, P < 0.05), with low (0.2% per generation) estimates of contemporary gene flow. Seascape analyses reveal an association with bathymetry and upwelling events, suggesting that adaptation to local environmental conditions may drive genetic differentiation in M. capensis. Importantly, our results highlight the need for temporal sampling in disentangling the complex factors that impact population divergence in marine fishes.

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