A series of 3-oxo-C12-HSL, tetramic acid, and tetronic acid analogues were synthesized to gain insights into the structural requirements for quorum sensing inhibition in Staphylococcus aureus. Compounds active against agr were noncompetitive inhibitors of the autoinducing peptide (AIP) activated AgrC receptor, by altering the activation efficacy of the cognate AIP-1. They appeared to act as negative allosteric modulators and are exemplified by 3-tetradecanoyltetronic acid 17, which reduced nasal cell colonization and arthritis in a murine infection model.

The focus of biomarker studies is shifting toward deciphering patterns of biomolecules as they provide a more comprehensive depiction of disease than individual biomarkers. Multiplexing technologies are crucial in deciphering such patterns, but it is essential that they are validated for reproducibility and precision to ensure accurate protein identification. Here the authors examine such properties in Cytokine Bead Array (CBA) and Luminex kits and compare concentration measurements to those obtained using enzyme-linked immunosorbent assay (ELISA). Luminex kits were found to be highly reproducible and reliable; however, CBA kits were not due to aberrant standards. Absolute cytokine concentrations were dependent on the detection kit, but correlations with ELISA were good for all technologies.

We have investigated the effects of explicit molecular interactions and the membrane dipole potential on the absorption and emission spectra of a widely used fluorescent probe, di-8-ANEPPS, in a dipalmitoylphosphatidylcholine (DPPC) and a mixed DPPC/cholesterol membrane bilayer. Ground-state and excited-state geometries were calculated with the complete active space self-consistent field (CASSCF) method. Interactions with up to 260 atoms of the membrane bilayer were explicitly incorporated using a decoupled quantum mechanics/molecular mechanics (QM/MM) approach, utilizing recent advances in time-dependent density functional theory (TDDFT). We find that no specific molecular interactions affect the fluorescence of di-8-ANEPPS; rather, the magnitude of the membrane dipole potential is key to the shifts observed in both of the two lowest excited states.

We have investigated the absorption and emission spectrum of 5-hydroxyindole in the gas phase and in various solvents. 5-Hydroxyindole is the fluorophore of the non-natural amino acid 5-hydroxytryptophan, which has attracted recent interest as a novel intrinsic probe for protein structure, dynamics, and function. Gas-phase and implicit solvent calculations were performed with multiconfigurational perturbation theory (CASPT2). An explicit solvent model was calculated using a decoupled quantum mechanics/molecular mechanics approach, utilizing recent advances in time-dependent density functional theory. The importance of hydrogen bonding is shown by comparing the implicit solvent model calculations with the explicit solvent calculations and experimental results. In line with other indole systems, the order of the 1L state peaks in 5-hydroxindole is 1L(b) at lower energy than 1L(a), with the emitting state being 1L(a).

Multilayer lipid membranes perform many important functions in biology, such as electrical isolation (myelination of axons), increased surface area for biocatalytic purposes (thylakoid grana and mitochondrial cristae), and sequential processing (golgi cisternae). Here we develop a simple layer-by-layer methodology to form lipid multilayers via vesicle rupture onto existing supported lipid bilayers (SLBs) using poly l-lysine (PLL) as an electrostatic polymer linker. The assembly process was monitored at the macroscale by quartz crystal microbalance with dissipation (QCM-D) and the nanoscale by atomic force microscopy (AFM) for up to six lipid bilayers. By varying buffer pH and PLL chain length, we show that longer chains (≥300 kDa) at pH 9.0 form thicker polymer supported multilayers, while at low pH and shorter length PLL, we create close packed layers (average lipid bilayers separations of 2.8 and 0.8 nm, respectively). Fluorescence recovery after photobleaching (FRAP) and AFM were used to show that the diffusion of lipid and three different membrane proteins in the multilayered membranes has little dependence on lipid stack number or separation between membranes. These approaches provide a straightforward route to creating the complex membrane structures that are found throughout nature, allowing possible applications in areas such as energy production and biosensing while developing our understanding of the biological processes at play.