We report the discovery of a population of the exotic North African Water Frog Pelophylax saharicus around the Etang de Berre, on the Mediterranean coast of France, about 25 km north-west of Marseille. The animals had been originally identified as P. perezi or P. kl. grafi by a combination of acoustic and morphological characters and their true identity was not revealed until three samples from one locality were included in a large-scale genomic work dedicated to the genus Pelophylax. Mitochondrial barcoding of the samples from other areas around Etang de Berre did not detect any native P. perezi or P. kl. grafi and confirmed that P. saharicus has spread to several localities, does reproduce and has been present since 2011 at least. We suggest that dedicated field work is needed as soon as possible to (i) map the extant of P. saharicus’s distribution around the Etang de Berre, (ii) establish if populations of the native P. perezi – kl. grafi system still persist around the Etang de Berre or not and (iii) check if P. saharicus has spread to neighboring areas or not. Depending on the answers to these three questions, local conservationists will need to evaluate the feasibility and relevance of any action to control the spread of this new invasive species and attempt to eradicate it.
Linnaean and Wallacean shortfalls (Uncertainties on species taxonomy and distribution, respectively) are major factors hampering efficient conservation planning in the current context of biodiversity erosion. These shortfalls concern even widespread and abundant species in relatively well-studied regions such as the Mediterranean biodiversity hotspot which still hosts a large fraction of unrecognised biodiversity, notably in small vertebrates. Species delimitations have long been based on phylogenetic analyses of a small number of standard markers, but accurate lineage identification in this context can be obscured by incomplete lineage sorting, introgression or isolation by distance. Recently, integrative approaches coupling various sets of characters or analyses of contact zones aiming at estimating reproductive isolation (RI) have been advocated instead. Analyses of introgression patterns in contact zone with genomic data represent a powerful way to confirm the existence of independent lineages and estimate the strength of their RI at the same time. The Spiny-footed Lizard Acanthodactylus erythrurus (Schinz, 1833) is widespread in the Iberian Peninsula and the Maghreb and exhibits a large amount of genetic diversity, although the precise number and distribution of its genetic lineages remain poorly understood. We applied a RADseq approach to obtain a genome wide SNPs dataset on a contact zone in central Morocco between the previously described Rif and Middle-Atlas lineages. We show that these two lineages exhibit strong RI across this contact zone, as shown by the limited amount and restricted spatial extant of gene flow. We interpret these results as evidence for species-level divergence of these two lineages. Our study confirms the usefulness of RADseq approaches applied on contact zones for cryptic diversity studies and therefore to resolve Linnaean and Wallacean shortfalls.
The description of Vipera walser from the Northern Italian Alps as a new species (Ghielmi et al., 2016, Journal of Zoological Systematics and Evolutionary Research, 54, 161) was one of the most unexpected surprises of European herpetology in the 21st century. In mitochondrial (mt) DNA, it is closely related to a group of vipers only present in the Caucasus region and Northeastern Anatolia. However, its morphology is similar to the V. berus populations that inhabit nearby mountains in the Swiss‐Italian Alps, which raises questions on its relationships and status. We thus sequenced five nuclear (nu) genes to determine the position of V. walser relative to V. berus and to the Caucasian/Northeastern Anatolian vipers in nuDNA. We also reanalyzed five previously sequenced mtDNA fragments. NuDNA markers recovered V. walser as closely related to Italian populations of V. berus and not to the Caucasian/Anatolian species, thus contradicting the mtDNA phylogeny. We checked that each of the five mtDNA fragments independently amplified by Ghielmi et al. (2016, Journal of Zoological Systematics and Evolutionary Research, 54, 161) produced individual gene trees compatible with the concatenated mtDNA phylogeny, thus excluding the hypothesis that NUMTs sequencing generated the mtDNA relationships reported by Ghielmi et al. (2016, Journal of Zoological Systematics and Evolutionary Research, 54, 161). Given the low level of nuclear differentiation between V. walser and the Italian population of V. berus, we argue that ancient admixture between V. berus and the ancestral population of V. walser is the most likely explanation for this case of cyto‐nuclear discordance and we discuss the consequences of these results on the systematic status of V. walser.
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