SummaryPlant-associated mycobiomes in extreme habitats are understudied and poorly understood. We analysed Illumina-generated ITS1 sequences from the needle mycobiome of white spruce (Picea glauca) at the northern treeline in Alaska (USA). Sequences were obtained from the same DNA that was used for tree genotyping. In the present study, fungal metabarcoding and tree microsatellite data were compared for the first time.In general, neighbouring trees shared more fungal taxa with each other than trees growing in further distance. Mycobiomes correlated strongly with phenological host traits and local habitat characteristics contrasting a dense forest stand with an open treeline site. Genetic similarity between trees did not influence fungal composition and no significant correlation existed between needle mycobiome and tree genotype.Our results suggest the pronounced influence of local habitat conditions and phenotypic tree traits on needle-inhabiting fungi. By contrast, the tree genetic identity cannot be benchmarked as a dominant driver for needle-inhabiting mycobiomes, at least not for white spruce in this extreme environment.
This paper introduces a new approach–the Principal Component Gradient Analysis (PCGA)–to detect ecological gradients in time-series populations, i.e. several time-series originating from different individuals of a population. Detection of ecological gradients is of particular importance when dealing with time-series from heterogeneous populations which express differing trends. PCGA makes use of polar coordinates of loadings from the first two axes obtained by principal component analysis (PCA) to define groups of similar trends. Based on the mean inter-series correlation (rbar) the gain of increasing a common underlying signal by PCGA groups is quantified using Monte Carlo Simulations. In terms of validation PCGA is compared to three other existing approaches. Focusing on dendrochronological examples, PCGA is shown to correctly determine population gradients and in particular cases to be advantageous over other considered methods. Furthermore, PCGA groups in each example allowed for enhancing the strength of a common underlying signal and comparably well as hierarchical cluster analysis. Our results indicate that PCGA potentially allows for a better understanding of mechanisms causing time-series population gradients as well as objectively enhancing the performance of climate transfer functions in dendroclimatology. While our examples highlight the relevance of PCGA to the field of dendrochronology, we believe that also other disciplines working with data of comparable structure may benefit from PCGA.
To understand the spatial structure of monospecific Tugai forests (Xinjiang Province, China) growing as gallery woods nourished by ground water, root suckering in Populus euphratica was studied by a combination of morphological and molecular analyses. Seedlings grow a deep tap root and keep this as adult trees, whereas root suckers never develop a tap root but utilize the horizontally stretching root of their parent trees. The resulting reverse ''T'' root architecture distinguishes reliably even adult root suckers from generatively grown trees. Due to assimilate input from the root sucker, the distal root (pointing away from the parent tree) becomes thicker soon than its proximal root, which allows determination of the direction of vegetative growth. One stand including 279 young trees germinated from seeds and 267 root suckers was mapped completely, and selected suckers were assigned to parent trees by genotyping with microsatellite DNA. Root suckers develop up to 40 m away from parent trees on horizontal ''spacer'' roots, usually originating not deeper than 20 cm below surface. Trees begin with root suckering between 10 and 15 years, shortly before reaching flowering age. Cutting experiments indicated reduced survival of young root suckers disconnected from the parent tree. Without a tap root and with a rooting point close to the surface, declining ground water levels should lower the fitness of root suckers even more than that of generatively grown trees.
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