Discourse parsing is an integral part of understanding information flow and argumentative structure in documents. Most previous research has focused on inducing and evaluating models from the English RST Discourse Treebank. However, discourse treebanks for other languages exist , including Spanish, German, Basque, Dutch and Brazilian Portuguese. The tree-banks share the same underlying linguistic theory, but differ slightly in the way documents are annotated. In this paper, we present (a) a new discourse parser which is simpler, yet competitive (significantly better on 2/3 metrics) to state of the art for English, (b) a harmonization of discourse treebanks across languages, enabling us to present (c) what to the best of our knowledge are the first experiments on cross-lingual discourse parsing.
Word embeddings allow natural language processing systems to share statistical information across related words. These embeddings are typically based on distributional statistics, making it difficult for them to generalize to rare or unseen words. We propose to improve word embeddings by incorporating morphological information, capturing shared sub-word features. Unlike previous work that constructs word embeddings directly from morphemes, we combine morphological and distributional information in a unified probabilistic framework, in which the word embedding is a latent variable. The morphological information provides a prior distribution on the latent word embeddings, which in turn condition a likelihood function over an observed corpus. This approach yields improvements on intrinsic word similarity evaluations, and also in the downstream task of part-of-speech tagging.
Negative medical findings are prevalent in clinical reports, yet discriminating them from positive findings remains a challenging task for information extraction. Most of the existing systems treat this task as a pipeline of two separate tasks, i.e., named entity recognition (NER) and rule-based negation detection. We consider this as a multi-task problem and present a novel end-to-end neural model to jointly extract entities and negations. We extend a standard hierarchical encoder-decoder NER model and first adopt a shared encoder followed by separate decoders for the two tasks. This architecture performs considerably better than the previous rule-based and machine learning-based systems. To overcome the problem of increased parameter size especially for low-resource settings, we propose the Conditional Softmax Shared Decoder architecture which achieves state-of-art results for NER and negation detection on the 2010 i2b2/VA challenge dataset and a proprietary de-identified clinical dataset.
Comprehend Medical is a stateless and Health Insurance Portability and Accountability Act (HIPAA) eligible Named Entity Recognition (NER) and Relationship Extraction (RE) service launched under Amazon Web Services (AWS) trained using state-of-the-art deep learning models. Contrary to many existing open source tools, Comprehend Medical is scalable and does not require steep learning curve, dependencies, pipeline configurations, or installations. Currently, Comprehend Medical performs NER in five medical categories: Anatomy, Medical Condition, Medications, Protected Health Information (PHI) andTreatment, Test and Procedure (TTP). Additionally, the service provides relationship extraction for the detected entities as well as contextual information such as negation and temporality in the form of traits. Comprehend Medical provides two Application Programming Interfaces (API): 1) the NERe API which returns all the extracted named entities, their traits and the relationships between them and 2) the PHId API which returns just the protected health information contained in the text. Furthermore, Comprehend Medical is accessible through AWS Console, Java and Python Software Development Kit (SDK), making it easier for non-developers and developers to use.
Entity linking is the task of linking mentions of named entities in natural language text, to entities in a curated knowledge-base. This is of significant importance in the biomedical domain, where it could be used to semantically annotate a large volume of clinical records and biomedical literature, to standardized concepts described in an ontology such as Unified Medical Language System (UMLS). We observe that with precise type information, entity disambiguation becomes a straightforward task. However, fine-grained type information is usually not available in biomedical domain. Thus, we propose LATTE, a LATent Type Entity Linking model, that improves entity linking by modeling the latent fine-grained type information about mentions and entities. Unlike previous methods that perform entity linking directly between the mentions and the entities, LATTE jointly does entity disambiguation, and latent fine-grained type learning, without direct supervision. We evaluate our model on two biomedical datasets: MedMentions, a large scale public dataset annotated with UMLS concepts, and a de-identified corpus of dictated doctor's notes that has been annotated with ICD concepts. Extensive experimental evaluation shows our model achieves significant performance improvements over several state-of-the-art techniques.
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