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The phylum Chloroflexi contains several isolated bacteria that have been found to respire a diverse array of halogenated anthropogenic chemicals. The distribution and role of these Chloroflexi in uncontaminated terrestrial environments, where abundant natural organohalogens could function as potential electron acceptors, have not been studied. Soil samples (116 total, including 6 sectioned cores) from a range of uncontaminated sites were analyzed for the number of Dehalococcoides-like Chloroflexi 16S rRNA genes present. Dehalococcoides-like Chloroflexi populations were detected in all but 13 samples. The concentrations of organochlorine ([organochlorine]), inorganic chloride, and total organic carbon (TOC) were obtained for 67 soil core sections. The number of Dehalococcoides-like Chloroflexi 16S rRNA genes positively correlated with [organochlorine]/TOC while the number of Bacteria 16S rRNA genes did not. Dehalococcoides-like Chloroflexi were also observed to increase in number with a concomitant accumulation of chloride when cultured with an enzymatically produced mixture of organochlorines. This research provides evidence that organohalide-respiring Chloroflexi are widely distributed as part of uncontaminated terrestrial ecosystems, they are correlated with the fraction of TOC present as organochlorines, and they increase in abundance while dechlorinating organochlorines. These findings suggest that organohalide-respiring Chloroflexi may play an integral role in the biogeochemical chlorine cycle.T he phylum Chloroflexi is a deeply branching and diverse phylum containing isolates that are aerobic and anaerobic thermophiles, filamentous anoxygenic phototrophs, and anaerobic organohalide respirers (17,20,32,39). Chloroflexi have been estimated to dominate the microbial community of some seafloor sediments and also can make up 12% and 16% of the community in the B horizon of temperate grasslands and alpine meadows, respectively (9, 21, 47). Many of the Chloroflexi present in these environments have been found to form deeply branching lineages unrelated to any isolated strains of Chloroflexi. In addition, there is a lack of physiological data regarding the niche of these highabundance Chloroflexi.The Chloroflexi phylum contains several isolates that have been shown to be obligate organohalide respirers. These isolates include the genus Dehalococcoides and, more recently, Dehalobium chlorocoercia DF-1, strain o-17, and Dehalogenimonas lykanthroporepellens strains BL-DC-8 and BL-DC-9 (10, 31, 32, 50). Although the Dehalococcoides isolates have nearly identical 16S rRNA sequence similarities, Dehalobium, strain o-17, and Dehalogenimonas are more distantly related, with 89 to 91% 16S rRNA gene sequence identity to each other and approximately 87 to 90% 16S rRNA gene sequence identity to the cultured Dehalococcoides species (5, 31, 50). Members of the genus Dehalococcoides have been found to dechlorinate a wide range of persistent organic contaminants, and as a part of mixed consortia, Dehalococcoideslike species are t...

It is important to control biofilm cohesiveness to optimize process performance. In this study, a membraneaerated biofilm reactor inoculated with activated sludge was used to grow mixed-culture biofilms of different ages and thicknesses. The cohesions, or cohesive energy levels per unit volume of biofilm, based on a reproducible method using atomic force microscopy (F. Ahimou, M. J. Semmens, P. J. Novak, and G. Haugstad, Appl. Environ. Microbiol. 73:2897-2904, 2007), were determined at different locations within the depths of the biofilms. In addition, the protein and polysaccharide concentrations within the biofilm depths, as well as the dissolved oxygen (DO) concentration profiles within the biofilms, were measured. It was found that biofilm cohesion increased with depth but not with age. Level of biofilm cohesive energy per unit volume was strongly correlated with biofilm polysaccharide concentration, which increased with depth in the membrane-aerated biofilm. In a 12-day-old biofilm, DO also increased with depth and may therefore be linked to polysaccharide production. In contrast, protein concentration was relatively constant within the biofilm and did not appear to influence cohesion.Biofilms are ubiquitous in nature, and they can be beneficial or troublesome, depending upon where and how they grow. There appears to be a consensus that the content of extracellular polymeric substances (EPS) is important in biofilm cohesion and biofilm adhesion to surfaces. For example, Klapper et al. (17) used a model based on polymer viscoelastic properties and suggested that the material properties of biofilm were largely determined by the EPS, implying that biofilm strength should indeed be linked to EPS quantity and composition. In addition, a recent study by Xavier et al. (35) proposed a kinetic model to describe biofilm detachment that was based on enzymatic disruption of the EPS matrix, thereby affecting biofilm cohesiveness.The EPS content of a biofilm can differ in quantity and character as a result of environmental factors. Numerous environmental factors have been reported to promote EPS production. These include high levels of oxygen (4), limited availability of nitrogen (15,22), desiccation (25), low temperature (16), low pH (28), and nutrient deprivation (20). Weiner et al. (34) described several roles and functions for EPS, including that of protection against environmental stress. In addition, Davies et al. (8) showed that activation of a gene (algC) for production of the exopolymer alginate was higher for Pseudomonas aeruginosa when attached to a Teflon mesh than for unattached P. aeruginosa. This suggests that organisms are able to respond to their environments and change EPS compositions and therefore their adhesion abilities, based on the surfaces to which they attach. Multivalent cations, such as those of calcium and magnesium, also probably play a role in the cohesiveness of microbial aggregates, as evaluated from studies of anaerobic sludge granules (12), activated sludge flocs (13), and biofilms ...

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Despite reports in the literature of superior contaminant degradation in the root-zone of plants, this phenomenon, known as the rhizosphere effect, is poorly understood. We investigated whether root exudates could enhance desorption of residual pollutants, thus improving bioavailability and subsequent biodegradation potential. Root exudates were harvested from three species of hydroponically grown plants, and artificial root exudates (AREs) were created using a literature recipe. Aliquots of the exudates were metabolized by soil bacteria to investigate whether biotransformed exudates exhibited different chemical characteristics or had different effects on contaminant bioavailability than 'raw exudates.' Slurries of naphthalene-aged soil containing raw exudates had a significantly lower soil-water distribution coefficient (Kd) than slurries with metabolized exudates or no-exudate controls, exhibiting median reductions of 50% and 55%, respectively. Raw exudates had a significantly lower surface tension while not increasing overall solubility, indicating the presence of surface-active compounds below the critical micelle concentration; this is a newly observed mechanism of the rhizosphere effect. Exudate samples were characterized by specific UV absorbance, spectral slope, fluorescence index, and excitation-emission matrices. Substantial changes in organic carbon character pre- and postmetabolism, and between harvested exudates and AREs, suggest that AREs are not chemically representative of plant root exudates. Overall, we present evidence that enhanced contaminant desorption in the presence of exudates provides an abiotic contribution to the rhizosphere effect.