Plasmodium vivax is the leading cause of human malaria in Asia and Latin America but is absent from most of central Africa due to the near fixation of a mutation that inhibits the expression of its receptor, the Duffy antigen, on human erythrocytes. The emergence of this protective allele is not understood because P. vivax is believed to have originated in Asia. Here we show, using a non-invasive approach, that wild chimpanzees and gorillas throughout central Africa are endemically infected with parasites that are closely related to human P. vivax. Sequence analyses reveal that ape parasites lack host specificity and are much more diverse than human parasites, which form a monophyletic lineage within the ape parasite radiation. These findings indicate that human P. vivax is of African origin and likely selected for the Duffy-negative mutation. All extant human P. vivax parasites are derived from a single ancestor that escaped out of Africa.

Although tool use is known to occur in species ranging from naked mole rats [1] to owls [2], chimpanzees are the most accomplished tool users [3-5]. The modification and use of tools during hunting, however, is still considered to be a uniquely human trait among primates. Here, we report the first account of habitual tool use during vertebrate hunting by nonhumans. At the Fongoli site in Senegal, we observed ten different chimpanzees use tools to hunt prosimian prey in 22 bouts. This includes immature chimpanzees and females, members of age-sex classes not normally characterized by extensive hunting behavior. Chimpanzees made 26 different tools, and we were able to recover and analyze 12 of these. Tool construction entailed up to five steps, including trimming the tool tip to a point. Tools were used in the manner of a spear, rather than a probe or rousing tool. This new information on chimpanzee tool use has important implications for the evolution of tool use and construction for hunting in the earliest hominids, especially given our observations that females and immature chimpanzees exhibited this behavior more frequently than adult males.

Anthropologists have long been interested in the behavioral ecology of nonhuman primates living in savannas given what we know of early hominin environments. As expected, chimpanzees in the Fongoli community in southeastern Sénégal show a unique suite of behavioral adaptations to stresses associated with their savanna habitat. While Fongoli chimpanzees are species-typical in certain regards, such as including ripe fruit in the diet during all months of the year, they also adjust their behavior to the particular stresses of this dry, hot and open environment. These behaviors include using caves as shelters during the dry season, soaking in pools of water during the hot, early rainy season, and traveling and foraging at night during maximum phases of the moon. Adult males of this 35-member community serve as focal subjects in a long-term study of the ecology and behavior of chimpanzees in a savanna-mosaic environment. Here, we report on Fongoli chimpanzee activity budgets, grouping behavior, and habitat use during the dry versus wet season based on over 2500 hours of observation from March 2005-July 2006. Findings support the hypothesis that ecological pressures associated with a savanna environment significantly affect great ape behavior. The Fongoli chimpanzees' large home range (>65km²) is sometimes used cyclically, with the community traveling as one large party, in contrast to the typical chimpanzee fission-fusion pattern. Combined with data on temperature in the various habitats within the savanna mosaic, results show that Fongoli chimpanzees minimize energy expenditure during the hottest months and at the hottest time of day by resting more and traveling less, in addition to selectively using small patches of closed-canopy habitats, such as gallery forest. They move significantly more during early hours of the hot, dry season specifically and range in smaller parties at this time compared to during the wet season. The stresses associated with a savanna-mosaic environment and chimpanzees' behavioral adjustments to them have important implications for understanding early hominin behavior in similar environments.

For anthropologists, meat eating by primates like chimpanzees (Pan troglodytes) warrants examination given the emphasis on hunting in human evolutionary history. As referential models, apes provide insight into the evolution of hominin hunting, given their phylogenetic relatedness and challenges reconstructing extinct hominin behaviour from palaeoanthropological evidence. Among chimpanzees, adult males are usually the main hunters, capturing vertebrate prey by hand. Savannah chimpanzees (P. t. verus) at Fongoli, Sénégal are the only known non-human population that systematically hunts vertebrate prey with tools, making them an important source for hypotheses of early hominin behaviour based on analogy. Here, we test the hypothesis that sex and age patterns in tool-assisted hunting (n=308 cases) at Fongoli occur and differ from chimpanzees elsewhere, and we compare tool-assisted hunting to the overall hunting pattern. Males accounted for 70% of all captures but hunted with tools less than expected based on their representation on hunting days. Females accounted for most tool-assisted hunting. We propose that social tolerance at Fongoli, along with the tool-assisted hunting method, permits individuals other than adult males to capture and retain control of prey, which is uncommon for chimpanzees. We assert that tool-assisted hunting could have similarly been important for early hominins.

Malaria parasites, though widespread among wild chimpanzees and gorillas, have not been detected in bonobos. Here, we show that wild-living bonobos are endemically Plasmodium infected in the eastern-most part of their range. Testing 1556 faecal samples from 11 field sites, we identify high prevalence Laverania infections in the Tshuapa-Lomami-Lualaba (TL2) area, but not at other locations across the Congo. TL2 bonobos harbour P. gaboni, formerly only found in chimpanzees, as well as a potential new species, Plasmodium lomamiensis sp. nov. Rare co-infections with non-Laverania parasites were also observed. Phylogenetic relationships among Laverania species are consistent with co-divergence with their gorilla, chimpanzee and bonobo hosts, suggesting a timescale for their evolution. The absence of Plasmodium from most field sites could not be explained by parasite seasonality, nor by bonobo population structure, diet or gut microbiota. Thus, the geographic restriction of bonobo Plasmodium reflects still unidentified factors that likely influence parasite transmission.

The last part of the chimpanzee (Pan troglodytes) habituation process of the Taï South Group was monitored over 2 years (1994–1996), during which all males and most of the females became habituated to observation by humans. The time needed (5–7 years) to habituate the community was similar to that recorded for the Taï North Group and is comparable to other populations studied in Africa. Variation emerged in habituation rate: males were habituated earlier than females, and among females, sexually cycling individuals were habituated faster than non-cycling females. Such differences may be a function of both the methods used to find the chimpanzees and the sex of the individual. Reproductive status and individuality may also have influenced habituation rates by affecting the number of contacts required to habituate a chimpanzee to neutral humans.

Classical ecology provides principles for construction and function of biological communities, but to what extent these apply to the animal-associated microbiota is just beginning to be assessed. Here, we investigated the influence of several well-known ecological principles on animal-associated microbiota by characterizing gut microbial specimens from bilaterally symmetrical animals (Bilateria) ranging from flies to whales. A rigorously vetted sample set containing 265 specimens from 64 species was assembled. Bacterial lineages were characterized by 16S rRNA gene sequencing. Previously published samples were also compared, allowing analysis of over 1,098 samples in total. A restricted number of bacterial phyla was found to account for the great majority of gut colonists. Gut microbial composition was associated with host phylogeny and diet. We identified numerous gut bacterial 16S rRNA gene sequences that diverged deeply from previously studied taxa, identifying opportunities to discover new bacterial types. The number of bacterial lineages per gut sample was positively associated with animal mass, paralleling known species-area relationships from island biogeography and implicating body size as a determinant of community stability and niche complexity. Samples from larger animals harbored greater numbers of anaerobic communities, specifying a mechanism for generating more-complex microbial environments. Predictions for species/abundance relationships from models of neutral colonization did not match the data set, pointing to alternative mechanisms such as selection of specific colonists by environmental niche. Taken together, the data suggest that niche complexity increases with gut size and that niche selection forces dominate gut community construction.

Coprophagy is common in captive primates but has also been reported in the wild. For example, wild apes extract and reingest items from faeces. We term this behavior seed reingestion because the dung matrix is not consumed. We assessed the importance of seed reingestion in a population of savannah chimpanzees at Fongoli, southeastern Senegal, one of the hottest and driest areas of the species' range, where chimpanzees have a relatively narrow dietary repertoire. We observed habituated chimpanzees on 122 d during 8 mo in 2005 and 2006, employing both focal subject and scan sampling of identified individuals for 1278 h of data collection. Chimpanzees reingested seeds of 2 species: Parkia biglobosa and Adansonia digitata. Both seed species have a hard protective shell, and the embryos are rich in proteins and lipids. Chimpanzees initially ate the fruit matrix pulp and swallowed intact seeds before reingesting and chewing/destroying seeds. Seed reingestion accounted for almost 2% of feeding time. We suggest that at Fongoli this behavior may be an adaptive strategy to maximize food intake, by softening the seed's shell and making the seed's content more accessible.