In many lichen-forming fungi, molecular phylogenetic analyses lead to the discovery of cryptic species within traditional morphospecies. However, in some cases, molecular sequence data also questions the separation of phenotypically characterised species. Here we apply an integrative taxonomy approach – including morphological, chemical, molecular, and distributional characters – to re-assess species boundaries in a traditionally speciose group of hair lichens, Bryoria sect. Implexae. We sampled multilocus sequence and microsatellite data from 142 specimens from a broad intercontinental distribution. Molecular data included DNA sequences of the standard fungal markers ITS, IGS, GAPDH, two newly tested loci (FRBi15 and FRBi16), and SSR frequencies from 18 microsatellite markers. Datasets were analysed with Bayesian and maximum likelihood phylogenetic reconstruction, phenogram reconstruction, STRUCTURE Bayesian clustering, principal coordinate analysis, haplotype network, and several different species delimitation analyses (ABGD, PTP, GMYC, and DISSECT). Additionally, past population demography and divergence times are estimated. The different approaches to species recognition do not support the monophyly of the 11 currently accepted morphospecies, and rather suggest the reduction of these to four phylogenetic species. Moreover, three of these are relatively recent in origin and cryptic, including phenotypically and chemically variable specimens. Issues regarding the integration of an evolutionary perspective into taxonomic conclusions in species complexes, which have undergone recent diversification, are discussed. The four accepted species, all epitypified by sequenced material, are Bryoria fuscescens, B. glabra, B. kockiana, and B. pseudofuscescens. Ten species rank names are reduced to synonymy. In the absence of molecular data, they can be recorded as the B. fuscescens complex. Intraspecific phenotype plasticity and factors affecting the speciation of different morphospecies in this group of Bryoria are outlined.

Population genetics of the tree-colonizing lichen Lobaria pulmonaria were studied in the largest primeval beech forest of Europe, covering 10 000 ha. During an intensive survey of the area, we collected 1522 thallus fragments originating from 483 trees, which were genotyped with eight mycobiont- and 14 photobiont-specific microsatellite markers. The mycobiont and photobiont of L. pulmonaria were found to consist of two distinct gene pools, which are co-existing within small areas of 3-180 ha in a homogeneous beech forest. The small-scale distribution pattern of the symbiotic gene pools show habitat partitioning of lineages associated with either floodplains or mountain forests. Using approximate Bayesian computation (ABC), we dated the divergence of the two fungal gene pools of L. pulmonaria as the Early Pleistocene. Both fungal gene pools survived the Pleistocene glacial cycles in the Carpathians, although possibly in climatically different refugia. Fungal diversification prior to these cycles and the selection of photobionts with different altitudinal distributions explain the current sympatric, but ecologically differentiated habitat partitioning of L. pulmonaria. In addition, the habitat preferences of the mycobiont are determined by other factors and are rather independent of those of the photobiont at the landscape level. The distinct gene pools should be considered evolutionarily significant units and deserve specific conservation priorities in the future, for example gene pool A, which is a Pliocene relict.

The Uholka-Shyrokyi Luh area of the Carpathian Biosphere Reserve is considered the largest and the most valuable primeval beech forest in Europe for biodiversity conservation. To study the impact of different topographic and forest-stand variables on epiphytic lichen diversity a total of 294 systematically distributed sampling plots were surveyed and 198 epiphytic lichen species recorded in this forest landscape, which has an uneven-aged structure. The obtained data were analysed using a non-metric multidimensional ordination and a generalized linear model. The epiphytic lichen species density at the plot level was mainly influenced by altitude and forest-stand variables. These variables are related to both the light availability i.e. canopy closure, and the habitat diversity, i.e. the developmental stage of the forest stands and the mean stem diameter. We found that lichen species density on plots with a relatively open canopy was significantly higher than on plots with a fairly loose or closed canopy structure. The late developmental stage of forest stands, which is characterized by a large number of old trees with rough and creviced bark, had a strong positive effect on lichen species density. In the Uholka-Shyrokyi Luh primeval forest the mean stem diameter of beech trees significantly correlated with lichen species density per plot. Similar trends in the species diversity of nationally red-listed lichens were revealed. Epiphytic lichens with a high conservation value nationally and Communicated by T. G. Allan Green.

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Eurasian Cetraria steppae and the more widely distributed C. aculeata are two lichen species traditionally distinguished by Eastern European and Spanish lichenologists on the basis of their morphological and ecological characteristics. Other specialists, however, consider them puzzling. This paper aims to evaluate the taxonomic status of these members of the C. aculeata group and thereby to clarify their conservation status in Ukraine. Morphological, chemical and ecological features of specimens originating from populations in different regions of Ukraine were tested and compared with the main characteristics commonly used for the species delimitation. Neither morphological nor chemical traits were found to correlate with ecological characteristics on a small geographical scale. Variation in the norstictic acid content detected in 256 individuals from 13 populations in Ukraine showed no correlation with the morphological characteristics that are currently used for species delimitation. These morphological features appear to vary continuously and did not support subdivision among the specimens studied. We hypothesize that C. steppae and C. aculeata are conspecific, and provide a formal synonymy. Specimens with norstictic acid are regarded as a different chemotype. Possible evolutionary and adaptive roles of norstictic acid in C. aculeata s. lat. are discussed. Based on current and historical data, we consider C. aculeata s. lat. as vulnerable in Ukraine, according to the IUCN criteria for regional Red List assessment.

Occupancy and density of the epiphytic lichen L. pulmonaria were studied in the mountains of Uholka-Shyrokyi Luh (Ukraine), which include the largest primeval beech forest in Europe. The lichen occupancy was assessed on 314 plots laid out on a systematic grid. Additional data on population density were collected from 483 trees growing both, on and between these plots. The trees harbouring L. pulmonaria were distributed very sparsely within Uholka-Shyrokyi Luh, and occupy nearly 10 % of the studied perimeter. The generalized linear models showed that area of occupancy of L. pulmonaria was significantly influenced by altitude and canopy cover, whereas the species' density was explained by habitat types and slope exposition. Population density is higher at the timberline than in the interior forest or on lowland meadows. We found a bimodal altitudinal distribution of L. pulmonaria, with maxima below and above 900 m a.s.l., where it prefers forest stands with loose or scattered canopy. The preferred position of L. pulmonaria on host tree trunks depends on stand density and allows the species to get the necessary level of insolation also in shaded sites where it grows higher up on the trunk than in open stands. While L. pulmonaria occupied trees with various diameters, juvenile individuals are more frequent on small trees, but mature lichen individuals are predominantly found on trees of average or large sizes. Fertile individuals require specific environmental conditions, which are available at intermediate altitudes, related with sheltered light, and horizontal terraces on slopes with eastern exposition. In general, the primeval beech forest of Uholka-Shyrokyi Luh harbours a high percentage of juvenile thalli of L. pulmonaria, which lack vegetative propagules. Mature individuals have a Communicated by Pradeep Kumar Divakar.

• Premise of the study: The locally rare, haploid, lichen-forming fungi Bryoria capillaris, B. fuscescens, and B. implexa are associated with boreal forests and belong to Bryoria sect. Implexae. Recent phylogenetic studies consider them to be conspecific. Microsatellite loci were developed to study population structure in Bryoria sect. Implexae and its response to ecosystem disturbances.• Methods and Results: We developed 18 polymorphic microsatellite markers using 454 pyrosequencing data assessed in 82 individuals. The number of alleles per locus ranged from two to 13 with an average of 4.6. Nei’s unbiased gene diversity, averaged over loci, ranged from 0.38 to 0.52. The markers amplified with all three species, except for markers Bi05, Bi15, and Bi18.• Conclusions: The new markers will allow the study of population subdivision, levels of gene introgression, and levels of clonal spread of Bryoria sect. Implexae. They will also facilitate an understanding of the effects of forest disturbance on genetic diversity of these lichen species.

Central Europe in general is poor in Teloschistaceae lichen crusts (Caloplaca s. lat.).