Land degradation reduces soil functioning and, consequently, the services that soil provides. Soil hydrological functions are critical to combat soil degradation and promote soil restoration. Soil microorganisms affect soil hydrology, but the role of soil microbiota in forming and sustaining soil is not well explored. Case studies indicate the potential of soil microorganisms as game-changers in restoring soil functions. We review the state of the art of microorganism use in land restoration technology, the groups of microorganisms with the greatest potential for soil restoration, knowledge of the effect of microorganisms on soil physical properties, and proposed strategies for the long-term restoration of degraded lands. We also emphasize the need to advance the emerging research field of biophysical landscape interactions to support soil-plant ecosystem restoration practices.

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Pathways of ammonium (NH4 (+)) removal were investigated using the stable isotope approach in constructed wetlands (CWs). We investigated and compared several types of CWs: planted horizontal subsurface flow (HSSF), unplanted HSSF, and floating plant root mat (FPRM), including spatial and seasonal variations. Plant presence was the key factor influencing efficiency of NH4 (+) removal in all CWs, what was illustrated by lower NH4 (+)-N removal by the unplanted HSSF CW in comparison with planted CWs. No statistically significant differences in NH4 (+) removal efficiencies between seasons were detected. Even though plant uptake accounted for 32-100 % of NH4 (+) removal during spring and summer in planted CWs, throughout the year, most of NH4 (+) was removed via simultaneous nitrification-denitrification, what was clearly shown by linear increase of δ(15)N-NH4 (+) with decrease of loads along the flow path and absence of nitrate (NO3 (-)) accumulation. Average yearly enrichment factor for nitrification was -7.9 ‰ for planted HSSF CW and -5.8 ‰ for FPRM. Lack of enrichment for δ(15)N-NO3 (-) implied that other processes, such as nitrification and mineralization were superimposed on denitrification and makes the stable isotope approach unsuitable for the estimation of denitrification in the systems obtaining NH4 (+) rich inflow water.

Microbial mats, due to stratification of the redox zones, have a potential to include a complete N cycle, however an attempt to evaluate a complete N cycle in these ecosystems has not been yet made. In this study, occurrence and rates of major N cycle processes were evaluated in intact microbial mats from Elkhorn Slough, Monterey Bay, CA, USA, and Baja California Sur, Mexico under oxic and anoxic conditions using 15N-labeling techniques. All of the major N transformation pathways, with the exception of anammox, were detected in both microbial mats. Nitrification rates were found to be low at both sites for both seasons investigated. The highest rates of ammonium assimilation were measured in Elkhorn Slough mats in April and corresponded to high in situ ammonium concentration in the overlying water. Baja mats featured higher ammonification than ammonium assimilation rates and this, along with their higher affinity for nitrate compared to ammonium and low dissimilatory nitrate reduction to ammonium rates, characterized their differences from Elkhorn Slough mats. Nitrogen fixation rates in Elkhorn Slough microbial mats were found to be low implying that other processes such as recycling and assimilation from water are main sources of N for these mats at the times sampled. Denitrification in all of the mats was incomplete with nitrous oxide as end product and not dinitrogen. Our findings highlight N cycling features not previously quantified in microbial mats and indicate a need of further investigations in these microbial ecosystems. Importance: Nitrogen is essential for life. The nitrogen cycle on Earth is mediated by microbial activity and has had a profound impact on both the atmosphere and the biosphere throughout geologic time. Microbial mats, present in many modern environments, have been regarded as living records of the organisms, genes, and phylogenies of microbes, as they are one of the most ancient ecosystems on Earth. While rates of major nitrogen metabolic pathways have been evaluated in a number of ecosystems, it remains elusive in microbial mats. In particular it is unclear what factors affect nitrogen cycling in these ecosystems and how morphological differences between mats impact nitrogen transformations. In this study we investigate nitrogen cycling in two microbial mats having morphological differences. Our findings provide insight for further understanding of biogeochemistry and microbial ecology of microbial mats.