This paper presents the observations of ionospheric parameters in Kaliningrad (54° N, 20° E) during a meteorological storm in the Baltic Sea during October 2017 and 2018. Analysis of the total electronic content (TEC) during the storm showed that perturbations of the TEC values from the median can reach two standard deviations of the value. For the critical frequency of the F2 layer, it was 1.5–1.6 times the standard deviations. On days of a meteorological storm, significant changes were noted in the dynamics of the E-layer’s critical frequency. The reasons for the occurrence of the observed phenomena were due to the propagation of acoustic-gravity waves generated by convective processes in the lower atmosphere during periods of a meteorological storm. Spectral analysis of TEC variations revealed an increase in the amplitudes of ionospheric variations 10–16 min over the area of a meteorological storm. The analysis allowed us to conclude that ionospheric perturbations during the meteorological perturbation were caused by increased acoustic-gravity wave (AGW) generation processes in the lower atmosphere. The most likely cause of negative ionospheric disturbances were processes associated with the dissipation of AGW propagating from the area of a meteorological storm and increased turbulence in the lower thermosphere.
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