The paper is in two parts. Part I presents results of a Monte Carlo randomization study of Papadakis's covariance method of NN analysis which show that (i) a non-iterated Papadakis analysis tends to be conservatively biassed; (ii) iteration of the analysis as suggested by Bartlett (1978) leads to substantial positive bias in the treatment F ratio; (iii) the method is very inefficient when there are substantial trend effects in the data. A theoretical explanation of these results is given.Part II describes a new method of NN analysis discovered by the first author and developed in collaboration with the co-authors. The method is essentially a "movingblock" analogue of classical forms of analysis for "fixed" blocks (or rows, columns). It avoids the defects of Papadakis's method and leads to approximately unbiassed analyses. It is nearly always and often substantially more efficient on average than classical analyses of complete or incomplete block experiments, and also more efficient than standard analyses of Latin or lattice square designs if there are appreciable row X column interactions in the data. New criteria of design for NN balance are described. Validity of the new method under randomization is demonstrated empirically with Monte Carlo studies.
Hardy–Weinberg equilibrium (HWE) is the state of the genotypic frequency of two alleles of one autosomal gene locus after one discrete generation of random mating in an indefinitely large population: if the alleles areAandawith frequenciespandq(=1-p), then the equilibrium gene frequencies are simplypandqand the equilibrium genotypic frequencies forAA,Aaandaaarep2, 2pqandq2. It was independently identified in 1908 by G. H. Hardy and W. Weinberg after earlier attempts by W. E. Castle and K. Pearson. Weinberg, well known for pioneering studies of twins, made many important contributions to genetics, especially human genetics. Existence of this equilibrium provides a reference point against which the effects of selection, linkage, mutation, inbreeding and chance can be detected and estimated. Its discovery marked the initiation of population genetics.
The use of correlation coefficients, F‐statistics and LSDs was described for measuring judge performance in terms of agreement, reliability, discrimination, stability, and variability. The technique was applied to a number of wine‐quality evaluation experiments. It was shown that a single analysis of variance of all judges' scores in an experiment will often be inappropriate. Further, it was demonstrated that judges' performances varied over time. It was, therefore, recommended that each judge's performance be monitored continually and that when judges were unreliable and nondiscriminating, they would be ignored in drawing conclusions from the experiment. The analysis for wine differences should be based on a separate analysis of each set of homogeneous judges as determined from the measures for agreement, reliability, and variability.
The approach to linkage equilibrium of a locus linked to the locus determining gametophytic self-incompatibility (S) is considered. For the simplest case of three alleles at the S locus and two at the linked locus it is necessary to consider 3 measures of linkage disequilibrium. These are found to approach their equilibrium value of zero in one of three ways: 1) steadily declining to zero; 2) oscillating as decline proceeds; 3) a combination: 2) followed by 1). Linkage equilibrium may be established before genotype frequencies reach their expectation under random crossing. Earlier studies (Li 1951; Moran 1962) of the approach to S allele equilibrium have been based on the assumption that all types of pollen take part in fertilizations equally frequently. Such an assumption leads to simpler expressions for changes in S gene frequencies but is extremely unrealistic and, in particular, leads to a different rate of approach to equilibrium from the more comprehensive model. It is shown that even in the absence of selection it is not possible to predict the equilibrium gene frequency of a linked locus until S allele equilibrium is reached. This frequency may be either higher or lower than that calculated from a gene count in the starting genotype pool. However, these two gene frequencies may stabilize long before linkage equilibrium is achieved. An examination of selection against one genotype at the linked locus is undertaken. If linkage is complete, lethality can be less effective at reducing the gene frequency than is less intense selection (in only a few generations of selection). Here too linkage equilibrium may be established with selection still effective in bringing about a decline in gene frequency. An examination of the analysis and conclusions of Rasmuson (1980) shows that because these were based on the inadequate formulae previously discussed and exclude phenomena discussed above, they are misleading. The possibility of a gametophytic self-incompatibility system providing a sufficient condition for the sheltering of lethals in the absence of the condition of complete linkage to the S locus (r=0) is shown to be unlikely.
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