Phosphorus (P) availability and soil water are two important environmental factors in lowland rice paddies. They limit the ability of rice to form mutualistic associations with arbuscular mycorrhizal fungi (AMF). The dynamics of this symbiotic interaction are intensified by phosphorus deficiency and attenuated by anaerobic conditions. However, the effects of combined phosphorus deficiency and anaerobic conditions on AMF symbiosis in paddy soil were unproven. The main objective of this study is to determine the influence of phosphorus and water availabilities on indigenous AMF colonization and community in Sangyod Muang Phatthalung (SMP) rice. Rice seedlings were grown in pots containing P-deficient organic paddy soil with or without phosphorus fertilization under non-flooded and flooded conditions for 2, 4 and 6 weeks. The application and omission of P soil fertilization influenced phosphate accumulations in rice seedlings, producing conditions of P-sufficiency and P-deficiency, respectively, in the plants. To determine the effects of phosphorus and water availabilities on AMF colonization and community structures, roots were analyzed microscopically and molecularly. Flooding considerably reduced the intensity of indigenous AMF root colonization whereas the nonenrichment of P availability did not. Reduced AMF colonization was concomitant with lower abundances of two major Glomeromycota ASVs in roots under flooding. This result suggested that soil water availability plays the primary role in shaping AMF communities in SMP roots. This study emphasized the primacy of water management when considering the use of AMF in the production of SMP rice in an organic cultivation system.
Isoprene is a climate-active biogenic volatile organic compound (BVOC), emitted into the atmosphere in abundance, mainly from terrestrial plants. Soil is an important sink for isoprene due to its consumption by microbes. In this study, we report the ability of a soil bacterium to degrade isoprene. Strain 13f was isolated from soil beneath wild Himalayan cherry trees in a tropical restored forest. Based on phylogenomic analysis and an Average Nucleotide Identity score of >95%, it most probably belongs to the species Alcaligenes faecalis. Isoprene degradation by Alcaligenes sp. strain 13f was measured by using gas chromatography. When isoprene was supplied as the sole carbon and energy source at the concentration of 7.2 × 105 ppbv and 7.2 × 106 ppbv, 32.6% and 19.6% of isoprene was consumed after 18 days, respectively. Genome analysis of Alcaligenes sp. strain 13f revealed that the genes that are typically found as part of the isoprene monooxygenase gene cluster in other isoprene-degrading bacteria were absent. This discovery suggests that there may be alternative pathways for isoprene metabolism.
The Deepwater Horizon incident in the Gulf of Mexico in 2010 released an unprecedented amount of petroleum hydrocarbons 1500 meters below the sea surface. Few studies have considered the influence of hydrostatic pressure on bacterial community development and activity during such spills. The goal of this study was to investigate the response of indigenous sediment microbial communities to the combination of increased pressure, hydrocarbons and dispersant. Deep-sea sediment samples collected from the northern Gulf of Mexico were incubated at atmospheric pressure (0.1 MPa) and at elevated pressure (10 MPa), with and without the addition of crude oil and dispersant. After incubations at 4 °C for 7 days, Colwellia and Psychrobium were highly abundant in all samples. Pressure differentially impacted members of the Alteromonadales. The influences of pressure on the composition of bacterial communities were most pronounced when dispersant was added to the incubations. Moritella and Thalassotalea were greatly stimulated by the addition of dispersant, suggesting their roles in dispersant biodegradation. However, Moritella was negatively impacted by increasing pressure. The presence of dispersant was shown to decrease the relative abundance of a known hydrocarbon degrader, Cycloclasticus, while increasing pressure increased its relative abundance. This study highlights the significant influence of pressure on the development of microbial communities in the presence of oil and dispersant during oil spills and related response strategies in the deep sea.
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