Summary Salt stress decreases plant growth prior to significant ion accumulation in the shoot. However, the processes underlying this rapid reduction in growth are still unknown. To understand the changes in salt stress responses through time and at multiple physiological levels, examining different plant processes within a single set‐up is required. Recent advances in phenotyping has allowed the image‐based estimation of plant growth, morphology, colour and photosynthetic activity. In this study, we examined the salt stress‐induced responses of 191 Arabidopsis accessions from 1 h to 7 days after treatment using high‐throughput phenotyping. Multivariate analyses and machine learning algorithms identified that quantum yield measured in the light‐adapted state (Fv′/Fm′) greatly affected growth maintenance in the early phase of salt stress, whereas the maximum quantum yield (QYmax) was crucial at a later stage. In addition, our genome‐wide association study (GWAS) identified 770 loci that were specific to salt stress, in which two loci associated with QYmax and Fv′/Fm′ were selected for validation using T‐DNA insertion lines. We characterized an unknown protein kinase found in the QYmax locus that reduced photosynthetic efficiency and growth maintenance under salt stress. Understanding the molecular context of the candidate genes identified will provide valuable insights into the early plant responses to salt stress. Furthermore, our work incorporates high‐throughput phenotyping, multivariate analyses and GWAS, uncovering details of temporal stress responses and identifying associations across different traits and time points, which are likely to constitute the genetic components of salinity tolerance.

No abstract

Shrimp waste is rich in organic compounds and essential plant nutrients, e.g., calcium (Ca), and converting these wastes to organic fertilizer is important for environmental preservation and to achieve sustainable agricultural management. In the current study, Ca-rich biochar was prepared from shrimp wastes (SWB) by pyrolysis at 300 °C. We hypothesized that the Ca-rich biochar will help in solving the problem of plant growth in saline soil by reducing sodium (Na) uptake and mitigating oxidative stress. The current study aimed to investigate the effect of SWB on the quality of saline sandy soil and the mechanism of salt resistance in pearl millet (Pennisetum glaucum L.). Pearl millet plants were planted in saline sandy soil (10 dS m−1) in wooden boxes (1.3 × 0.8 m size and 0.4 m height), and 5 doses (0, 1.0, 1.5, 2.0, and 2.5% (w/w)) of SWB were added. SWB application increased the soil quality and nutrient uptake by pearl millet plants. The highest rate of SWB increased the soil microbial biomass carbon and the activity of dehydrogenase enzyme by 43 and 47% compared to the control soil. SWB application reduced the uptake of sodium (Na+) and chloride (Cl−) and increased the K/Na ratio in the leaf tissues. SWB addition significantly increased the activity of antioxidant enzymes, e.g., ascorbate peroxidase (APX), polyphenol oxidase (PPO), and pyrogallol peroxidases (PPX). The application of 2.5% SWB to the saline soil increased the soluble carbohydrates and proline in plant leaves by 75 and 60%, respectively, and reduced the malondialdehyde (MDA) by 32% compared to the control. SWB enhanced the antioxidant defense and mitigated oxidative stress by improving the synthesis of osmoprotectants, e.g., soluble carbohydrates and proline. Sandy saline soils in arid and semiarid areas suffer greatly from low organic matter contents, which reduces the soil quality and increases the risk of salt during plant growth. The high organic matter and calcium content (30%) in the shrimp waste-derived biochar improved the quality of the saline sandy soil, reduced the uptake of toxic salts, and increased the quality of the forage material. The addition of recycled shrimp waste to saline low-fertility soils improves soil productivity and is safe for soil health.

The most important disease of tomato is Fusarium wilt caused by Fusarium oxysporum f. sp. lycopersici (FOL). To control this disease, this study examined the combined use of bacterial bioagents and peppermint oil (PO). Seven bacterial isolates were collected from tomato plant rhizospheres and tested in vitro against FOL. The highest growth inhibition against FOL was shown by isolate No.3. This isolate was identified using 16S rRNA sequencing gene as Bacillus amyloliquefaciens (BA). Peppermint oil tested at different concentrations (1, 2, and 3%) against FOL mycelial growth in vitro showed the highest inhibition at 3%. The effects of BA, PO, and BA + PO in vitro on the seed germination and seedling vigor index of the tomato cv. ‘Tala F1’ was also tested. All “BA, PO, and BA + PO” treatments increased the percentage of germinated seeds and seedlings’ main shoots and root length compared to control treated seeds. The BA, PO, and BA + PO treatments were further tested under greenhouse and field conditions with pre-treated seedlings in FOL-contaminated soil. Under greenhouse conditions, each treatment decreased disease severity compared to untreated seedlings. Under field conditions, pre-treatment of tomato seedlings with BA and PO treatments reduced disease severity greater than BA + PO in combination and the mock-treated plants (66.6% for BA, 66.6% for PO and 55.3% for BA + PO, respectively). These findings support the use of BA or PO as bio-control agents against F. oxysporum in tomato. The interplay between peppermint oil, B. amyloliquefaciens, F. oxysporum, and the host plant requires further study to identify the causative mechanism for this increased disease resistance.

Soil salinity is one of the major abiotic stresses limiting plant growth and resulting in crop yield reductions. The adverse effects of salinity stress on plant growth happens in two phases: the osmotic phase, which occurs immediately after salt stress and results in a rapid inhibition in plant growth; and the ionic phase, which occurs after several days or weeks of salt stress, when ions accumulate to high toxic concentrations in the shoot and affects shoot function. Plants have evolved several mechanisms to deal with salt stress, which can be divided into three mechanisms: osmotic tolerance, ion exclusion and tissue tolerance. Key Concepts Osmotic stress causes a rapid and immediate inhibition of plant growth as a result of high salt concentration around the roots. Ionic stress occurs after several days or weeks of salt exposure, when Na + accumulates in the shoot to toxic concentrations. Osmotic tolerance is the ability of plants to maintain growth immediately after salt stress; it appears as an ability to better maintain growth and stomatal opening. Ion exclusion is the ability to exclude Na + from the shoots by the roots, to prevent accumulation of Na + in the shoot; it depends on the up‐ and downregulation of specific ion transporters to control the amount of Na + being transported to the shoot. Tissue tolerance is the ability of plants to tolerate elevated levels of Na + in the shoot; it requires Na + compartmentalisation into the vacuole and accumulation of compatible solutes in the cytoplasm. Halophytes are plants native to saline environments and that have high salinity tolerance. Glycophytes are salt‐sensitive plants, being a large majority of plants. Stomatal closure is closing of the stomatal pores to prevent water loss during salt and drought stress; it is stimulated by ABA, among other triggers Vacuolar Na + sequestration is an important tissue tolerance mechanism; It involves Na + transport from cytosol into vacuole to help maintain low cytosolic Na + . Salt bladders arise from epidermal cells; they are modified trichomes and provide an important mechanism of salt exclusion from the main part of leaves in halophytes.

Salt stress decreases plant growth prior to significant ion accumulation in the shoot. However, the processes underlying this rapid reduction in growth are still unknown. To understand the changes in salt stress responses through time and at multiple physiological levels, examining different plant processes within a single setup is required. Recent advances in phenotyping has allowed the image-based estimation of plant growth, morphology, colour and photosynthetic activity. In this study, we examined the salt stress-induced responses of 191 Arabidopsis accessions from one hour to seven days after treatment using high-throughput phenotyping. Multivariate analyses and machine learning algorithms identified that quantum yield measured in the light-adapted state (Fv′/Fm′) greatly affected growth maintenance in the early phase of salt stress, while maximum quantum yield (QY max) was crucial at a later stage. In addition, our genome-wide association study (GWAS) identified 770 loci that were specific to salt stress, in which two loci associated with QY max and Fv′/Fm′ were selected for validation using T-DNA insertion lines. We characterised an unknown protein kinase found in the QY max locus, which reduced photosynthetic efficiency and growth maintenance under salt stress. Understanding the molecular context of the identified candidate genes will provide valuable insights into the early plant responses to salt stress. Furthermore, our work incorporates high-throughput phenotyping, multivariate analyses and GWAS, uncovering details of temporal stress responses, while identifying associations across different traits and time points, which likely constitute the genetic components of salinity tolerance.

Pre-exposing (priming) plants to mild, non-lethal elevated temperature improves their tolerance to a later higher-temperature stress (triggering stimulus), which is of great ecological importance. ‘Thermomemory’ is maintaining this tolerance for an extended period of time. NAM/ATAF1/2/CUC2 (NAC) proteins are plant-specific transcription factors (TFs) that modulate responses to abiotic stresses, including heat stress (HS). Here, we investigated the potential role of NACs for thermomemory. We determined the expression of 104 Arabidopsis NAC genes after priming and triggering heat stimuli, and found ATAF1 expression is strongly induced right after priming and declines below control levels thereafter during thermorecovery. Knockout mutants of ATAF1 show better thermomemory than wild type, revealing a negative regulatory role. Differential expression analyses of RNA-seq data from ATAF1 overexpressor, ataf1 mutant and wild-type plants after heat priming revealed five genes that might be priming-associated direct targets of ATAF1: AT2G31260 (ATG9), AT2G41640 (GT61), AT3G44990 (XTH31), AT4G27720 and AT3G23540. Based on co-expression analyses applied to the aforementioned RNA-seq profiles, we identified ANAC055 to be transcriptionally co-regulated with ATAF1. Like ataf1, anac055 mutants show improved thermomemory, revealing a potential co-control of both NAC TFs over thermomemory. Our data reveals a core importance of two NAC transcription factors, ATAF1 and ANAC055, for thermomemory.

Chenopodium quinoa Willd. (quinoa) is a pseudocereal with high nutritional value and relatively high tolerance to several abiotic stresses, including water deficiency and salt stress, making it a suitable plant for the study of mechanisms of abiotic stress tolerance. NAC (NAM, ATAF and CUC) transcription factors are involved in a range of plant developmental processes and in the response of plants to biotic and abiotic stresses. In the present study, we perform a genome-wide comprehensive analysis of the NAC transcription factor gene family in quinoa. In total, we identified 107 quinoa NAC transcription factor genes, distributed equally between sub-genomes A and B. They are phylogenetically clustered into two major groups and 18 subgroups. Almost 75% of the identified CqNAC genes were duplicated two to seven times and the remaining 25% of the CqNAC genes were found as a single copy. We analysed the transcriptional responses of the identified quinoa NAC TF genes in response to various abiotic stresses. The transcriptomic data revealed 28 stress responsive CqNAC genes, where their expression significantly changed in response to one or more abiotic stresses, including salt, water deficiency, heat and phosphate starvation. Among these stress responsive NACs, some were previously known to be stress responsive in other species, indicating their potentially conserved function in response to abiotic stress across plant species. Six genes were differentially expressed specifically in response to phosphate starvation but not to other stresses, and these genes may play a role in controlling plant responses to phosphate deficiency. These results provide insights into quinoa NACs that could be used in the future for genetic engineering or molecular breeding.