The dynamic reshaping of tissues during morphogenesis results from a combination of individual cell behaviours and collective cell rearrangements. However, a comprehensive framework to unambiguously measure and link cell behaviour to tissue morphogenesis is lacking. Here we introduce such a kinematic framework, bridging cell and tissue behaviours at an intermediate, mesoscopic, level of cell clusters or domains. By measuring domain deformation in terms of the relative motion of cell positions and the evolution of their shapes, we characterize the basic invariant quantities that measure fundamental classes of cell behaviour, namely tensorial rates of cell shape change and cell intercalation. In doing so we introduce an explicit definition of cell intercalation as a continuous process. We demonstrate how spatiotemporal mapping of strain rates in three models of tissue morphogenesis leads to new insight into morphogenetic mechanisms. Our quantitative approach has broad relevance for the precise characterisation and comparison of morphogenetic phenotypes.

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