A molecular dynamics (MD) method using the multicanonical algorithm, multicanonical MD, is proposed to enhance the efficiency of conformational sampling of peptides. Multicanonical MD is a constant temperature MD on a deformed potential energy surface, which gives a multicanonical ensemble characterized by a flat energy distribution. The multicanonical ensemble, in turn, is converted into a canonical ensemble by the reweighting formula of Ferrenberg and Swendsen. The multicanonical algorithm was originally developed by Berg et al. as a method of Monte Carlo simulations. The multicanonical MD is its application to MD simulations. Using a system of a simple double-well potential, it was confirmed that this method yields a correct canonical distribution. A test of the method was also performed with a five-residue peptide, Met-enkephalin, and showed that multicanonical MD samples much larger conformational space than conventional canonical MD.

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Ag recognition by T lymphocytes induces immune synapse formation and recruitment of signaling molecules into a lipid raft. Cbp/PAG is a Csk-associated membrane adapter protein exclusively localized in a lipid raft. We identified NHERF/EBP50 as a Cbp-binding molecule, which connects the membrane raft and cytoskeleton by binding to both Cbp through its PDZ domain and ezrin-radixin-moesin through the C terminus. Overexpression of Cbp reduced the mobility of the raft on the cell surface of unstimulated T cells and prevented synapse formation and subsequent T cell activation, whereas a mutant incapable of EBP50 binding restored both synapse formation and activation. These results suggest that anchoring of lipid raft to the cytoskeleton through Cbp-EBP50-ezrin-radixin-moesin assembly regulates membrane dynamism for synapse formation and T cell activation.

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Forty-four patients with advanced gallbladder carcinoma (18 with stage pT3 and 26 with stage pT4 of the Union Internacional Contra la Cancrum classification) were aggressively managed by extended heptatic resection in 33 patients, bile duct resection in 28, pancreaticoduodenectomy in seven, gastrointestinal resection in eleven and portal vein resection and reconstruction in seven. Adjacent organ involvement was classified as follows: type I, hepatic involvement with or without gastrointestinal invasion (Ia, Ib); type II, bile duct involvement with or without gastrointestinal invasion (IIa, IIb); type III, hepatic and bile duct involvement with or without gastrointestinal invasion (IIIa, IIIb); type IV, gastrointestinal involvement without hepatic or bile duct invasion. Fourteen of 15 patients with type I tumours had a curative resection compared with seven of 26 with type III lesions (P < 0.0001). The surgical mortality rate was two of 15 patients with type I tumours, seven of 26 with type III tumours and nine of 44 for the whole group. The long-term survival rate after curative resection was four and two of 23 at 3 and 5 years respectively, significantly better than two and none of 21 at 1 and 2 years after non-curative resection (P < 0.01). The survival rate after curative resection for patients with type I tumours was four and two of 14 at 3 and 5 years respectively, significantly better than for other types (P < 0.05). This classification of advanced gallbladder carcinoma according to involvement of adjacent organs might be helpful in planning surgery for this condition; in particular, type I tumours should be treated by a radical surgical procedure to achieve a favourable outcome.

Atm1p, a mitochondrial half-type ATP-binding cassette (ABC) protein in Saccharomyces cerevisiae, transports a precursor of the iron-sulfur (Fe/S) cluster from mitochondria to the cytosol. We have identified a novel half-type human ABC protein, designating it MTABC3 (mammalian mitochondrial ABC protein 3). MTABC3 mRNA is ubiquitously expressed in all of the rat and human tissues examined. MTABC3 protein is shown to be present in the mitochondria, as assessed by immunoblot analysis and confocal microscopic analysis of subcellular fractions of Chinese hamster ovary cells stably expressing MTABC3. Accumulation of iron in the mitochondria, mitochondrial DNA damage, and respiratory dysfunction in the yeast ATM1 mutant strain (atm1-1 mutant cells) were almost fully reversed by expressing MTABC3 in these mutant cells. These results indicate that MTABC3 is a novel ortholog of the yeast and suggest an important role in mitochondrial function. Interestingly, the human MTABC3 gene has been mapped to chromosome 2q36, a region within the candidate locus for lethal neonatal metabolic syndrome, a disorder of the mitochondrial function associated with iron metabolism, indicating that MTABC3 is a candidate gene for this disorder. ATP-binding cassette (ABC)1 proteins constitute one of the largest superfamily of membrane proteins in both prokaryotic and eukaryotic organisms, and their general structures are well conserved in evolution (1, 2). In eukaryotes, most of the members of the ABC protein family function as ATP-dependent active transporters in the plasma membranes and the membranes of intracellular organelle, including the endoplasmic reticulum, vacuoles, peroxisome, and mitochondria (3-7). Some ABC proteins, however, function as ion channels or regulators of ion channels (2,8,9). Recently, mutations of ABC proteins have been shown to be responsible for various genetic diseases in man (10). Mitochondria provide cells with energy for many biological functions by oxidative phosphorylation. Reactive oxygen species are by-products of respiration. Their interaction with free iron in mitochondria through the Fenton reaction could lead to oxidative damage to lipids, proteins, and DNA in mitochondria (11,12), suggesting that iron homeostasis is crucial in the maintenance of mitochondrial function.Atm1p was the first member of the ABC protein family identified in mitochondria (7), and it plays an important role in normal cellular growth and iron homeostasis (11, 13). Further analysis of Atm1p has shown that it transports the precursor of the Fe/S cluster from mitochondria to the cytosol (14). Because mutation of ATM1 results in mitochondrial dysfunction (11), mutations of human mitochondrial ABC proteins could be associated with various diseases. Although the complete genomic sequences of Saccharomyces cerevisiae and Escherichia coli predict the existence of 29 and 79 members of the ABC protein family, respectively (15, 16), only a few mitochondrial ABC proteins have been identified to date.In the course of our search for human ABC p...

We conclude that 1) hepatic resection is effective in select patients with colorectal metastases; 2) adequate resection margin and adjuvant regional chemotherapy can improve outcome; and 3) microscopic fibrous pseudocapsule may offer additional postoperative information as an independent prognostic factor.