1✉ 2 2 1 1 3 1 3 4,5 1 2 3 4 5 e.Proofing AbstractFrom 2014 through 2016, on-farm experiments were carried out in three provinces surrounding Bujumbura town in Burundi to improve the low potato (Solanum tuberosum) yields, which currently stand at about 6 t ha . It was hypothesised that in rain-fed conditions, improved varieties, healthier seed tubers, pre-sprouting in light, proper fertilisation and protection from late blight attack would improve yield and quality, such as tuber weight, tuber size and lower brown rot incidence. The treatments in the on-farm trials at five farms in each of three sites (15 replicates) were applied in two seasons, giving 30 replicates in 580 plots. The following treatments were compared with growers' current practices: introduction of two new varieties, use of early generation seed from a rapid multiplication scheme, earlier harvesting of a seed crop, seed storage in a diffused light store, and research-based timing and dose rate of fertilisers and fungicides. Marginal rates of return on investments were calculated at farm level and current and tested alternative technologies were compared. Costs and benefits of applying such techniques were calculated. An improved variety contributed up to 20% yield increase and healthier seed 80%. Early harvesting reduced yield by 30% and reduced incidence of brown rot in the current season, but increased it (from 21 to 39%) in the following season when tubers were replanted. Diffused light storage, alternating contact and systemic fungicide application, and application of chemical fertilisers resulted in 30, 50 and 60% yield increases, respectively. It was shown that it is possible to double yields and economic returns (marginal rates of return) under the growing conditions in Burundi when growers plant healthy pre-sprouted seed of a new variety and apply chemical fertilisers and fungicides. KeywordsAcceptable minimum rate of return Chemical fertilisers Diffused light store −1 e.Proofing

In Burundi most small-scale farmers still grow traditional cassava landraces that are adapted to local conditions and have been selected for consumer preferred attributes. They tend to be susceptible, in varying degrees, to devastating cassava viral diseases such as Cassava Brown Streak Disease (CBSD) and Cassava Mosaic Disease (CMD) with annual production losses of US$1 billion. For long term resistance to the disease, several breeding strategies have been proposed. A sound basis for a breeding program is to understand the genetic diversity of both landraces and elite introduced breeding cultivars. This will also assist in efforts to conserve landraces ahead of the broad distribution of improved varieties which have the possibility of replacing landraces. Our study aimed at determining the genetic diversity and relationships within and between local landraces and introduced elite germplasm using morphological and single nucleotide polymorphism (SNP) markers. A total of 118 cultivars were characterized for morphological trait variation based on leaf, stem and root traits, and genetic variation using SNP markers. Results of morphological characterization based on Ward’s Method revealed three main clusters and five accessions sharing similar characteristics. Molecular characterization identified over 18,000 SNPs and six main clusters and three pairs of duplicates which should be pooled together as one cultivar to avoid redundancy. Results of population genetic analysis showed low genetic distance between populations and between local landraces and elite germplasm. Accessions that shared similar morphological traits were divergent at the molecular level indicating that clustering using morphological traits was inconsistent. Despite the variabilities found within the collection, it was observed that cassava germplasm in Burundi have a narrow genetic base.

In Burundi, most of small-scale farmers still grow traditional cassava landraces that are adapted to local conditions and have been selected for consumer preferred attributes. They tend to be susceptible, in varying degrees, to devastating cassava viral diseases such as Cassava Brown Steak Disease (CBSD) and Cassava Mosaic Disease (CMD) with production annual losses of US$1 billion annually. For long term resistance to the disease, several breeding strategies have been proposed. A sound basis for a breeding program is to understand the genetic diversity of both landraces and elite introduced breeding cultivars. This will also assist in efforts to conserve landraces ahead of the broad distribution of improved varieties which have the possibility of replacing landraces. Our study aimed at determining the genetic diversity and relationships of local landraces and introduced elite germplasm using morphological and simple nucleotide polymorphism (SNP) markers as well as identifying a core set of germplasm from the local varieties to be used in the cassava breeding program. A total of 118 cultivars were characterized for morphological trait variation based on leaf, stem and root traits, and genetic variation using SNP markers. Results of morphological characterization based on Ward’s Method revealed three main clusters and five accessions sharing similar characteristics. Molecular characterization identified over 18,000 SNPs and six main clusters and three pairs of duplicates which should be pooled together as one cultivar to avoid redundancy. Results of population genetic analysis showed low genetic distance between populations and between local landraces and elite germplasm. Accessions that shared similar morphological traits were divergent at the molecular level indicating that clustering using morphological traits was inconsistent. Despite the variabilities found within the collection, it was observed that cassava germplasm in Burundi have a narrow genetic base.