The Smiles-type ion fragmentation mechanism is facile for the title compounds, despite the necessity for carbonyl oxygen to serve as a nucleophile. This rearrangement probably occurs in many of the mass spectra reported for structurally similar compounds, in which the nucleophile may be a thione, arylthio, imine, methylene, or methine moiety.

The central mission for the development of the National Institute of Standards and Technology/National Institutes of Health/Environmental Protection Agency Mass Spectral Library is the acquisition of reference gas chromatography–mass spectrometry data for important compounds and their chemical modification products. The addition of reliable reference data of various derivatives of amino acids to The Library, and the study of their behavior under electron ionization conditions may be useful for their identification, structure elucidation, and a better understanding of the data obtained when the same derivatives are subjected to other ionization methods. N-Alkyl-N-perfluoroacyl derivatives of amino acids readily produce previously unreported alkylnitrilium cations of composition [HC≡N-alkyl]+. Homologous [HC≡N-aryl]+ cations are typical for corresponding N-aryl analogs. The formation of other ions characteristic for these derivatives involves oxygen rearrangement giving rise to ions [CnF2n+1–C≡N+–CnH2n+1] and [CnF2n+1–C≡N+-aryl]. The introduction of an N-benzyl substituent in a molecule favors a process producing benzylidene iminium cations. l-Threonine and l-cysteine derivatives exhibit more fragmentation pathways not typical for other α-amino acids; additionally, the Nω-amino group in l-lysine directs the dissociation process and provides structural information on the substitution at the amino functions in the molecule.

Mono-, di- and trialkyl derivatives of 'sulfabenzamide' (N-4-aminophenylsulfonylbenzamide) have been prepared and their electron ionization (EI) mass spectra examined. It is found that the fragmentation of N-alkylsulfabenzamides (alkyl = CH(3) to n-C(5)H(11)) proceeds via a very specific rearrangement process. The proposed mechanism involves an intermediate formation of distonic molecular ions, and the driving force for this process is the formation of stable N-alkylphenylcyanide cations [R-N(+)≡CC(6)H(5)]. The findings are confirmed by exact mass measurements, tandem mass spectrometry (MS/MS) experiments and deuterium labeling.

A method for isolation of enriched fractions of amino acids from human plasma followed by derivatization, gas chromatography separation and mass spectrometry identification is described. The method involves a stepwise extraction of plasma constituents with the use of two solvents: (a) extraction with methanol yields a concentrate of polyols, urea, carbohydrates and most long‐chain saturated and unsaturated aliphatic acids, and (b) further solubilization with water produces mainly a concentrate of amino acids. Chemical modification of amino acids with methyl chloroformate/methanol gives rise to methyl esters of methoxycarbonyl derivatives. The derivatization products are stable and quite suitable for gas chromatography with mass spectrometry analysis. The electron ionization mass spectra of the derivatization products reveal specific fragmentation patterns applicable for structure elucidation. The efficiency of the method is demonstrated by gas chromatography with mass spectrometry identification of 19 amino acids as their methyl esters of methoxycarbonyl derivatives in Standard Reference Material 1950 Metabolites in Frozen Human Plasma.