Global biodiversity in freshwater and the oceans is declining at high rates. Reliable tools for assessing and monitoring aquatic biodiversity, especially for rare and secretive species, are important for efficient and timely management. Recent advances in DNA sequencing have provided a new tool for species detection from DNA present in the environment. In this study, we tested whether an environmental DNA (eDNA) metabarcoding approach, using water samples, can be used for addressing significant questions in ecology and conservation. Two key aquatic vertebrate groups were targeted: amphibians and bony fish. The reliability of this method was cautiously validated in silico, in vitro and in situ. When compared with traditional surveys or historical data, eDNA metabarcoding showed a much better detection probability overall. For amphibians, the detection probability with eDNA metabarcoding was 0.97 (CI = 0.90-0.99) vs. 0.58 (CI = 0.50-0.63) for traditional surveys. For fish, in 89% of the studied sites, the number of taxa detected using the eDNA metabarcoding approach was higher or identical to the number detected using traditional methods. We argue that the proposed DNA-based approach has the potential to become the next-generation tool for ecological studies and standardized biodiversity monitoring in a wide range of aquatic ecosystems.

In recent years, policy-makers have sought the development of appropriate tools to prevent and manage introductions of invasive species. However, these tools are not well suited for introductions of non-target species that are unknowingly released alongside intentionally-introduced species. The most compelling example of such invasion is arguably the topmouth gudgeon Pseudorasbora parva, a small cyprinid species originating from East Asia. A combination of sociological, economical and biological factors has fuelled their rapid invasion since the 1960s; 32 countries (from Central Asia to North Africa) have been invaded in less than 50 years. Based on a combination of monitoring surveys (2535 populations sampled) and literature reviews, this paper aims to quantify and characterise important invasion parameters, such as pathways of introduction, time between introduction and detection, lag phase and plasticity of life history traits. Every decade, five new countries have reported

Using the electrofishing database of the French National Agency for Water and Aquatic Environment (Onema), the time trends of 48 freshwater fish taxa at 590 sites monitored for at least 8 years from 1990 to 2009 were investigated. The results demonstrated that species richness increased steadily from the beginning of the monitoring period. This is congruent with the finding that the number of species displaying a significant increase in spatial distribution or abundance was greater than those showing a significant decrease. Some species, however, had declined both in occurrence and abundance, e.g. tench Tinca tinca, common bream Abramis brama, brown trout Salmo trutta and European eel Anguilla anguilla. The species showing the most spectacular colonization were non-native, e.g. topmouth gudgeon Pseudorasbora parva, wels catfish Silurus glanis and asp Aspius aspius. The time trends in population density were related to the maximal body size, habitat requirement, occurrence and abundance and the status (i.e. native or exotic) but not to the spawning temperature.

Intraspecific diversity informs the demographic and evolutionary histories of populations, and should be a main conservation target. Although approaches exist for identifying relevant biological conservation units, attempts to identify priority conservation areas for intraspecific diversity are scarce, especially within a multi-specific framework. We used neutral molecular data on six European freshwater fish species (, ,, and) sampled at the riverscape scale (i.e. the Garonne-Dordogne river basin, France) to determine hot- and coldspots of genetic diversity, and to identify priority conservation areas using a systematic conservation planning approach. We demonstrate that systematic conservation planning is efficient for identifying priority areas representing a predefined part of the total genetic diversity of a whole landscape. With the exception of private allelic richness (PA), classical genetic diversity indices (allelic richness, genetic uniqueness) were poor predictors for identifying priority areas. Moreover, we identified weak surrogacies among conservation solutions found for each species, implying that conservation solutions are highly species-specific. Nonetheless, we showed that priority areas identified using intraspecific genetic data from multiple species provide more effective conservation solutions than areas identified for single species or on the basis of traditional taxonomic criteria.

Agricultural development modified the connectivity of the Rhône River delta waterbodies (also called the Camargue) which is now isolated from the Rhône River by dikes. Furthermore, the hydrographic network of the Camargue is constituted of irrigation and drainage canals, which are not directly connected. Pikeperch (Sander lucioperca L.), an allochthonous freshwater species, colonised the Rhône and the Camargue more than 50 years ago. We used morphometric and meristic features, otolith shape descriptors and protein electrophoresis in order to assess whether the Camargue houses one or several pikeperch populations. All characters except the meristic counts highlighted the existence of two subpopulations: one in the drainage network and one in the irrigation network. Electrophoresis showed that the irrigation network population is closer to the Rhône population and that the drainage network population displayed a high inbreeding rate. The causes of such isolation and the implications for the pikeperch population dynamics are discussed.

International audienceHigh-frequency microsatellite haplotypes of the male-specific Y-chromosome can signal past episodes of high reproductive success of particular men and their patrilineal descendants. Previously, two examples of such successful Y-lineages have been described in Asia, both associated with Altaic-speaking pastoral nomadic societies, and putatively linked to dynasties descending, respectively, from Genghis Khan and Giocangga. Here we surveyed a total of 5321 Y-chromosomes from 127 Asian populations, including novel Y-SNP and microsatellite data on 461 Central Asian males, to ask whether additional lineage expansions could be identified. Based on the most frequent eight-microsatellite haplotypes, we objectively defined 11 descent clusters (DCs), each within a specific haplogroup, that represent likely past instances of high male reproductive success, including the two previously identified cases. Analysis of the geographical patterns and ages of these DCs and their associated cultural characteristics showed that the most successful lineages are found both among sedentary agriculturalists and pastoral nomads, and expanded between 2100 BCE and 1100 CE. However, those with recent origins in the historical period are almost exclusively found in Altaic-speaking pastoral nomadic populations, which may reflect a shift in political organisation in pastoralist economies and a greater ease of transmission of Y-chromosomes through time and space facilitated by the use of horses

The unprecedented rate of global warming requires a better understanding of how ecosystems will respond. Organisms often have smaller body sizes under warmer climates (Bergmann's rule and the temperature-size rule), and body size is a major determinant of life histories, demography, population size, nutrient turnover rate, and food-web structure. Therefore, by altering body sizes in whole communities, current warming can potentially disrupt ecosystem function and services. However, the underlying drivers of warming-induced body downsizing remain far from clear. Here, we show that thermal clines in body size are predicted from universal laws of ecology and metabolism, so that size-dependent selection from competition (both intra and interspecific) and predation favors smaller individuals under warmer conditions. We validate this prediction using 4.1 × 10(6) individual body size measurements from French river fish spanning 29 years and 52 species. Our results suggest that warming-induced body downsizing is an emergent property of size-structured food webs, and highlight the need to consider trophic interactions when predicting biosphere reorganizations under global warming.

The aim of the study was to investigate if scale morphology could be used to discriminate fish populations at a local scale. To this aim, 168 rostrum dace (Leuciscus leuciscus burdigalensis) were collected at 3 sites in the River Viaur (SW France), distributed along 82 Km of stream. Seventy-one measurements were taken from scales: 2 shape factors and 69 Fourier coefficients. A Aquatic Sciencesstepwise discriminant analysis revealed that fish from the 3 sites showed morphological differences (p < 0.001), with an average of 75.6 % correct discrimination of the scales (65.5 % after the cross-validation procedure). These results reveal that scale morphology can detect spatial structure in fish populations at a fine scale, which has implications for riverine fish conservation.