We recovered passive integrated transponder (PIT) tags from nine piscivorous waterbird colonies in the Columbia River basin to evaluate avian predation on Endangered Species Act (ESA)‐listed salmonid Oncorhynchus spp. populations during 2007–2010. Avian predation rates were calculated based on the percentage of PIT‐tagged juvenile salmonids that were detected as passing hydroelectric dams and subsequently were consumed and deposited by birds on their nesting colonies. Caspian terns Hydroprogne caspia (hereafter, “terns”) and double‐crested cormorants Phalacrocorax auritus (hereafter, “cormorants”) nesting on East Sand Island in the Columbia River estuary consumed the highest proportions of available PIT‐tagged salmonids, with minimum predation rates ranging from 2.5% for Willamette River spring Chinook salmon O. tshawytscha to 16.0% for Snake River steelhead O. mykiss. Estimated predation rates by terns, cormorants, gulls of two species (California gull Larus californicus and ring‐billed gull L. delawarensis), and American white pelicans Pelecanus erythrorhynchos nesting near the confluence of the Snake and Columbia rivers were also substantial; minimum predation rates ranged from 1.4% for Snake River fall Chinook salmon to 13.2% for upper Columbia River steelhead. Predation on ESA‐listed salmonids by gulls and American white pelicans were minor (<2.0% per ESA‐listed salmonid population) relative to predation by terns and cormorants. Cumulative impacts were greater for Snake River and upper Columbia River salmonids than for salmonids originating closer to the estuary because upriver salmonids must migrate past more bird colonies to reach the ocean. Predation rates adjusted for colony size (per capita rates) were significantly higher for terns and cormorants nesting at inland colonies (upstream of Bonneville Dam) than for those nesting in the estuary, suggesting that inland colonies have a greater reliance on salmonids as a food source. Management actions to increase salmonid survival by reducing avian predation in the estuary could be offset if birds that disperse from the estuary relocate to inland nesting sites on or near the Columbia River.

Identification of the factors that influence susceptibility to predation can aid in developing management strategies to recover fish populations of conservation concern. Predator–prey relationships can be influenced by numerous factors, including prey condition, prey size, and environmental conditions. We investigated these factors by using juvenile steelhead Oncorhynchus mykiss from the Snake River (Pacific Northwest, USA), a distinct population segment that is listed as threatened under the U.S. Endangered Species Act. During 2007–2009, steelhead smolts (n = 25,909) were captured, examined for external condition characteristics (e.g., body injuries, descaling, external signs of disease, fin damage, and ectoparasite infestations), marked with passive integrated transponder (PIT) tags, and released to continue their out‐migration. Recoveries of PIT tags on a downstream colony of Caspian terns Hydroprogne caspia (n = 913 tags) indicated that steelhead susceptibility to Caspian tern predation increased significantly with decreases in steelhead external condition, decreased water discharge, and decreased water clarity. Susceptibility to Caspian tern predation also increased with increasing steelhead fork length up to 202 mm but then decreased for longer steelhead. Recoveries of PIT tags on a downstream colony of double‐crested cormorants Phalacrocorax auritus (n = 493 tags) indicated that steelhead susceptibility to double‐crested cormorant predation increased significantly with declining external condition of steelhead, and that steelhead of hatchery origin were more susceptible than their wild counterparts. Results indicate that steelhead susceptibility to avian predation is dependent on fish condition and length and is influenced by river conditions and rearing environment.