This study presents the results of a comparative analysis of the fungal diversity in the world system of microbial culture collections on one side with a variety of known fungal producers on the other side. The main VKM databases used are FungalDC and Metabolites of Fungi and the central point of analysis is the fungal ability to synthesize promising metabolites for applied use. It indicates that the option of obtaining new promising strains from the collection funds is still underestimated by the scientific community. In particular, it is shown that no more than 3% of the total fungal species fund contained in culture collections are used practically. It is possible that their use will considerably expand the range of studied strains and lead to the acquisition of new scientifically significant data.
The article provides information about All-Russian Collection of Microorganisms’ (VKM) fungi – potential producers of mycotoxins. A comparative analysis of the VKM database of the diversity of mycelial fungi with ChEBI (Chemical Entities of Biological Interest) and ChEMBL (Chemical Database of European Molecular Biology Laboratory) databases containing information on various chemical compounds was performed. It confirms that the fungi of VKM collection represent significant objects for a comprehensive study of their metabolome. Currently described mycotoxins for representatives of 44 genera of mycelial fungi of VKM are presented. More research in this area will allow a more active development of mycotoxin studies in representatives of hitherto poorly studied fungal taxa using the VKM collection fund.
This paper presents interconnections between catalogs of microbial culture collections and biological databases inspected. Microbial Biological Resources Centers (mBRCs) provide Life Science (LS) and biotechnology with fit-for-use microbiological resources and related data of consistent quality. To optimize the services, facilitate cumulative research, make crosschecks, and avoid duplication of efforts, must ensure that the databases developed and maintained are interconnected with mBRC data. This research shows that, at present, connections are minimal. It proposes ways to plug the mBRC databases into the Life Science community. Such connections could open dialogue by making the mBRC data visible and accessible from the Life Science databases, and reciprocally making the Life Science database records visible and accessible from the mBRC-aggregated catalog. For this purpose, we inspected most of the databases discovered on the Internet. Each database was characterized by name, acronym, year of the last correction, uniform resource location (URL), area of practical use (health system, agriculture, etc.), presence of microbial data and database producer. The databases with microbial data were inspected in more detail in terms of the lists of the partner databases, the lists of ontologies used, the access format from computer programs, and database subjects. Our new metabase has collected 2667 Life Science databases, from which 1123 databases have microbial data.
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