Sediment bacteria play important roles in the biogeochemistry of ocean sediments; however, factors influencing assemblage composition have not been extensively studied. We examined extractable sediment bacterial abundance, the composition of bacterial assemblages using a high-throughput molecular fingerprinting approach, and several sediment biogeochemical parameters (organic matter content and alkaline phosphatase activity), along a 35 km transect from Point Fermin, Southern California, to Santa Catalina Island, across the approximately 900-m-deep San Pedro Basin. Automated rRNA intergenic spacer analysis (ARISA) demonstrated that in two spatially isolated shallow (approximately < 60 m, on opposite sides of the channel) sediment environments, assemblages were more similar to each other than to deeper communities. Distinct communities existed in deeper and shallower sediments, and stations within the deep basin over 2 km apart contained remarkably similar assemblage fingerprints. The relative contribution to total amplified DNA fluorescence of operational taxonomic units (OTUs) was significantly correlated to that of other OTUs in few comparisons (2.7% of total), i.e. few bacterial types were found together or apart consistently. The relative proportions within assemblages of only a few OTU were significantly correlated to measured physicochemical parameters (organic matter content and wet/dry weight ratio of sediments) or enzyme (alkaline phosphatase) activities. A low percentage of shared OTU between shallow and deep sediments, and the presence of similar, but spatially isolated assemblages suggests that bacterial OTU may be widely dispersed over scales of a few kilometres, but that environmental conditions select for particular assemblages.

Abstract-The ability of the aquatic plant Eurasian Watermilfoil (Myriophyllum spicatum) to transform 2,4,6-trinitrotoluene (TNT) was investigated in a series of batch assays. The TNT was added to plant cultures in single and multiple consecutive additions, at various initial concentrations, to determine its transformation kinetics, identify products formed, evaluate phytotoxic effects, and to determine the effect of light deprivation on the TNT transformation process. Rapid disappearance of TNT from the plant culture media was observed. The TNT disappearance rate was a function of both plant and TNT concentration (i.e., followed mixed, secondorder kinetics). The TNT transformation occurred only in the presence of plants and was inhibited by the addition of sodium azide. Phytotoxicity leading to plant chlorosis was observed in batch plant cultures with an initial TNT concentration above 5.9 M. Reductive transformation of TNT to aminodinitrotoluenes and lower levels of hydroxylaminodinitrotoluene and diaminonitrotoluenes detected in the plant culture media accounted for less than 10 to 20% of the total TNT mass added. Extraction of plant material at the end of batch incubations when all TNT was depleted from the media yielded low levels of TNT and aminodinitrotoluenes and accounted for only 3.4% of the initially added TNT mass. Light deprivation decreased both the rate and extent of the reductive transformation of TNT.

The bioavailability of nutrients is important in controlling ecological processes and nitrogen cycling in oligotrophic mangrove forests, yet the variation of diazotrophic community structure and activity with nutrient availability in sediments remains largely unexplored. To investigate for the first time how nutrients in sediments affect spatial and temporal patterns of diazotrophic community structure and activity, the sedimentary environment of Twin Cays, Belize, was examined with respect to the effects of long‐term fertilization [treatments: control (Ctrl), nitrogen (N), and phosphorus (P)] on N2 fixation rates and nifH gene community structure. We found that N2 fixation rates were significantly higher at the P‐treatment, intermediate at the Ctrl‐treatment and lower in the N‐treatment (P: 4.2 ± 0.5, Crtl: 0.8 ± 0.1, N: 0.4 ± 0.1 nmol·N·g−1·h−1; P < 0.001) with spatial (Ctrl‐ and P‐treatments) and temporal (only P‐treatment) variability positively correlated with live root abundance (r2 = 0.473, P < 0.001) and concentration (r2 = 0.458, P < 0.0001). The community structure of diazotrophs showed larger spatial and temporal variability in the fertilized treatments than in the Ctrl‐treatment, with the relative abundance of OTUs (nifH operational taxonomic units) at the fertilized treatments inversely related to live root abundance. Overall, long‐term fertilization (with either N or P) affects not only nutrient levels in mangrove sediments directly, but also spatial and temporal patterns of both community structure and activity and likely plant‐microbe interactions as well. Our findings suggest that the maintenance of natural nutrient conditions in mangrove sediments is important to ensure the stability of microbial functional groups like diazotrophs.

No abstract

Rhizophora mangle L. (red mangrove) is the dominant species of mangrove in the Americas. At Twin Cays, Belize (BZ) red mangroves are present in a variety of stand structures (tall w5 m in height, transition y2-4 m and dwarf y1-1.5 m). These height differences are coupled with very different stable carbon and nitrogen isotopic values 1 (mean tall d 13 C~228.3%, d 15 N~0%; mean tall d 13 C~225.3%, d 15 N~210%). To determine the utility of using these distinct isotopic compositions as 'biomarkers' for paleoenvironmental reconstruction of mangrove ecosystems and nutrient availability, we investigated the distribution and isotopic (d 13 C and d 15 N) composition of different biochemical fractions (water soluble compounds, free lipids, acid hydrolysable compounds, individual amino acids, and the residual un-extractable compounds) in fresh and preserved red mangrove leaves from dwarf and tall trees. The distribution of biochemicals are similar in dwarf and tall red mangrove leaves, suggesting that, regardless of stand structure, red mangroves use nutrients for biosynthesis and metabolism in a similar manner. However, the d 13 C and d 15 N of the bulk leaf, the biochemical fractions, and seven amino acids can be used to distinguish dwarf and tall trees at Twin Cays, BZ. The data support the theory that the fractionation of carbon and nitrogen occurs prior to or during uptake in dwarf and tall red mangrove trees. Stable carbon and nitrogen isotopes could, therefore, be powerful tools for predicting levels of nutrient limitation at Twin Cays. The d 13 C and d 15 N of biochemical fractions within preserved leaves, reflect sedimentary cycling and nitrogen immobilization. The d 15 N of the immobilized fraction reveals the overlying stand structure at the time of leaf deposition. The isotopic composition of preserved mangrove leaves could yield significant information about changes in ecosystem dynamics, nutrient limitation and past stand structure in mangrove paleoecosystems.