In January 2021, Senegal reported the emergence of highly pathogenic avian influenza virus A(H5N1), which was detected on a poultry farm in Thies, Senegal, and in great white pelicans in the Djoudj National Bird Sanctuary. We report evidence of new transcontinental spread of H5N1 from Europe toward Africa.

In recent years very virulent (VV) IBDV strains and classical (CV)IBDV

The aim of this study was to detect and characterize pathogenic and antibiotic resistant Escherichia coli isolated from slaughterhouse wastewater and the effluents of a municipal wastewater treatment plant (WWTP) in Dakar, Senegal. Genetic markers associated with enterohemorrhagic E. coli (EHEC) and extraintestinal pathogenic E. coli (ExPEC) were screened in 268 E. coli isolates from slaughterhouse and 272 E. coli isolates from WWTP. Concerning antimicrobial resistance, 40 E. coli isolates were studied for each of the two sampling sites. None of the E. coli isolates harboring the genes associated with EHEC was detected in WWTP. Of the 13 tested virulence genes, fuyA and f17 were the most prevalent. The pathogenic and resistant E. coli was found in the raw wastewater and the influent of slaughterhouse. The final rejection used for urban gardening, including the watering of vegetables does not contain E. coli. These results showed that, after treatment, the sanitation risks associated with the reuse water from WWTP were low.

Background: Microsatellite markers represent a low-cost and efficient tool for rapid genotyping as compared to single nucleotide polymorphism markers in laboratories with limited resources. For the economically important yam species widely cultivated in developing countries, very few microsatellite markers are available and no marker database has been developed to date. Herein, we conducted a genome-wide microsatellite marker development among four yam species, identified cross-species transferable markers, and designed an easy-to-use web portal for the yam breeder community. Results: The screening of yam genomes resulted in 318,713; 322,501; 307,040 and 253,856 microsatellites in Dioscorea alata, D. rotundata, D. dumetorum, and D. zingiberensis, respectively. Mono-, di- and tri-nucleotides were the most important types of repeats in the different species and a total of 864,128 primer pairs were designed. Furthermore, we identified 1170 cross-species transferable microsatellite markers. Among them, a subset of 17 markers were experimentally validated with good discriminatory power regarding the species and the ploidy levels. Ultimately, we created and deployed a dynamic Yam Microsatellite Markers Database (Y2MD) available at http://yamdb.42web.io/. Y2MD is embedded with various useful tools such as JBrowse, Blast, insilicoPCR, and SSR Finder to facilitate the exploitation of microsatellite markers in yams. Conclusions: The present work is the first comprehensive microsatellite marker mining across several yam species and will contribute to advance yam genetic research and marker-assisted breeding. The released user-friendly database constitutes a valuable platform for yam breeders, especially those in developing countries. Keywords: genotyping; Dioscoreacea; database; microsatellite; transferable markers