This study examines the utility of morphology and DNA barcoding in species identification of freshwater fishes from north‐central Nigeria. We compared molecular data (mitochondrial cytochrome c oxidase subunit I (COI) sequences) of 136 de novo samples from 53 morphologically identified species alongside others in GenBank and BOLD databases. Using DNA sequence similarity‐based (≥97% cutoff) identification technique, 50 (94.30%) and 24 (45.30%) species were identified to species level using GenBank and BOLD databases, respectively. Furthermore, we identified cases of taxonomic problems in 26 (49.00%) morphologically identified species. There were also four (7.10%) cases of mismatch in DNA barcoding in which our query sequence in GenBank and BOLD showed a sequence match with different species names. Using DNA barcode reference data, we also identified four unknown fish samples collected from fishermen to species level. Our Neighbor‐joining (NJ) tree analysis recovers several intraspecific species clusters with strong bootstrap support (≥95%). Analysis uncovers two well‐supported lineages within Schilbe intermedius. The Bayesian phylogenetic analyses of Nigerian S. intermedius with others from GenBank recover four lineages. Evidence of genetic structuring is consistent with geographic regions of sub‐Saharan Africa. Thus, cryptic lineage diversity may illustrate species’ adaptive responses to local environmental conditions. Finally, our study underscores the importance of incorporating morphology and DNA barcoding in species identification. Although developing a complete DNA barcode reference library for Nigerian ichthyofauna will facilitate species identification and diversity studies, taxonomic revisions of DNA sequences submitted in databases alongside voucher specimens are necessary for a reliable taxonomic and diversity inventory.
The influence of physico-chemical properties of Oyun Reservoir, Offa, Nigeria (a shallow tropical African reservoir) on its zooplankton composition and abundance were investigated at three stations for two years between January 2002 and December 2003. Diversity is not high: only three groups of zooplankton were found: Rotifera with eight genera; and Cladocera and Copepoda with three genera each. Rotifera dominated numerically (71.02%), followed by Cladocera (16.45%) and Copepoda (12.53%). The zooplankton was more prevalent during the rainy season, and there were variations in the composition and abundance along the reservoir continuum. Factors such as temperature, nutrients, food availability, shape and hydrodynamics of the reservoir, as well as reproductive strategies of the organisms, strongly influence the generic composition and population density of zooplankton. Prevention of ecological deterioration of the water body would greatly should result in a more productive water body, rich in zooplankton and with better fisheries. Rev. Biol. Trop. 57
Growth and survival of Clarias gariepinus juveniles fed with a local feed and coppens commercial feed were observed for 16 weeks at the laboratory of the Department of Zoology, University of Ilorin, Nigeria. The proximate compositions and economics of the feeds and the water quality of the cultured tanks were assessed. Fish fed with coppens showed significant (P<0.05) higher weight increase, specific growth rate, protein efficiency ratio and low food conversion ratio than fish fed with local feed. Significant (P<0.05) higher mortality were recorded in fish fed with the local feed. The growth performance was a reflection of the proximate composition of the feeds with local feed having low crude protein (10.95%), lipid (3.95%) and ash (4.92%) when compared to coppens which had 42% crude protein, 12% lipid and 9.5% ash with protein being most significant. Carbohydrate (69.90%) and crude fiber (2.88%) were higher in the local feed than in coppens with an imbalance in carbohydrate and lipid ratio. Mortality was attributed to stress resulting from the poor quality of the feed. Cost of feeding with local feed to a weight gain of 31.67g was ₦80, while the cost of feeding with coppens to a weight gain of 148.58g was ₦16.
The ichthyofauna diversity of the Jebba Hydroelectric Power (HEP) Dam, Jebba, North-central Nigeria was studied. Fishes were sampled for 24 months using gill net, hook and line, and cast net. Individuals were identified using morphological and molecular (mitochondrial Cytochrome c Oxidase subunit I) data. A total of 9605 freshwater fishes were recorded during the sampling period. The use of an integrative taxonomic approach enabled the identification of 83 species belonging to 42 genera. Additionally, the study recorded three unidentified species – Ctenopoma sp, Malapterurus sp., and Protopterus sp. Analyses showed that individuals belonging to families Cichlidae and Mochokidae dominated the dam. The diversity analyses revealed relatively high fish diversity during the rainy season at the downstream section of Jebba HEP dam compared to the upstream section. The study, therefore, showed the presence of a diverse fish community comprising high species richness and diversity across the Jebba HEP dam. Finally, we recommend proper biodiversity monitoring and assessment of freshwater fish diversity across Nigeria. In addition, the use of an integrated taxonomic approach is recommended for appropriate species’ identification and studies of freshwater fishes from Nigeria.
The silver butter catfish (Schilbe intermedius) is widely distributed across African river systems. To date, information on its mitochondrial genetic diversity, population structure, and historical demography are not well-established. Herein, we combined newly generated mitochondrial cytochrome c oxidase (COI) subunit I gene sequences with previously published COI sequences in the global databases to reconstruct its phylogeography, population genetic structure, and historical demography. Results from the mtDNA phylogeography and species delimitation tests (Cluster algorithm-Species Identifier, Automatic Barcode Gap Discovery and Poison Tree Process model) revealed that S. intermedius comprises at least seven geographically defined matrilines. Although the overall haplotype diversity of S. intermedius was high (h = 0.90), results showed that East (Kenya) and West (Nigeria) African populations had low levels of haplotype diversity (h = ~0.40). In addition, population genetic polymorphism and historical demographics showed that S. intermedius populations in both East and West Africa underwent severe contractions as a result of biogeographic influences. The patterns of genetic diversity and population structure were consistent with adaptive responses to historical biogeographic factors and contemporary environmental variations across African river systems. This is suggestive of the influence of historical biogeographic factors and climatic conditions on population divergence of S. intermedius across African river systems. Given our discovery of previously
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