Understanding and exploiting the inhibition phenomenon, which promotes the stable coexistence of species, is a major challenge in the mathematical theory of the chemostat. Here, we study a model of two microbial species in a chemostat competing for a single resource in the presence of an external inhibitor. The model is a four-dimensional system of ordinary differential equations. Using general monotonic growth rate functions of the species and absorption rate of the inhibitor, we give a complete analysis for the existence and local stability of all steady states. We focus on the behavior of the system with respect of the three operating parameters represented by the dilution rate and the input concentrations of the substrate and the inhibitor. The operating diagram has the operating parameters as its coordinates and the various regions defined in it correspond to qualitatively different asymptotic behavior: washout, competitive exclusion of one species, coexistence of the species around a stable steady state and coexistence around a stable cycle. This bifurcation diagram which determines the effect of the operating parameters, is very useful to understand the model from both the mathematical and biological points of view, and is often constructed in the mathematical and biological literature.
A model of two microbial species in a chemostat competing for a single resource is considered, where one of the competitors that produces a toxin, which is lethal to the other competitor (allelopathic inhibition), is itself inhibited by the substrate. Using general growth rate functions of the species, necessary and sufficient conditions of existence and local stability of all equilibria of the four-dimensional system are determined according to the operating parameters represented by the dilution rate and the input concentration of the substrate. With Michaelis-Menten or Monod growth functions, it is well known that the model can have a unique positive equilibrium which is unstable as long as it exists. If a non monotonic growth rate is considered (which is the case when there is substrate inhibition), it is shown that a new positive equilibrium point exists which can be stable according to the operating parameters of the system. We describe its operating diagram, which is the bifurcation diagram giving the behavior of the system with respect to the operating parameters. By means of this bifurcation diagram, we show that the general model presents a set of fifteen possible behaviors: washout, competitive exclusion of one species, coexistence, multi-stability, occurrence of stable limit cycles through a supercritical Hopf bifurcations, homoclinic bifurcations and flip bifurcation. This diagram is very useful to understand the model from both the mathematical and biological points of view.
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