Phagotrophic protists are diverse and abundant in aquatic and terrestrial environments, making them fundamental to the transfer of matter/energy within their respective food webs. Recognising their grazing impact is essential to evaluate the role of protists in ecosystems, and this includes appreciating prey selectivity. Efforts have been made by groups and individuals to understand selective grazing behaviour by protists: many approaches and perspectives have been pursued, not all of which are compatible. This article, which is not a review, is the product of our discourse on this subject at the SAME 10 meeting. It is the work of individuals, assembled for their breadth of backgrounds, approaches, views, and expertise. Firstly, to communicate ideas and approaches, we develop a framework for selective feeding processes and suggest 6 steps: searching, contact, capture, processing, ingestion, digestion. We then separate study approaches into 2 categories: (1) those examining whole organisms at the community, population, and individual levels, and (2) those examining physiology and molecular attributes. Finally, we explore general problems associated with the field of protistan selective feeding (e.g. linking food selection into food webs and modeling). We do not present all views on any one topic, nor do we cover all topics; instead, we offer opinions and suggest avenues for continued study. Overall, this paper should stimulate further discourse on the subject and provide a roadmap for the future.
We investigated net growth rates of distinct bacterioplankton groups and heterotrophic nanoflagellate (HNF) communities in relation to phosphorus availability by analysing eight in situ manipulation experiments, conducted between 1997 and 2003, in the canyon-shaped Rímov reservoir (Czech Republic). Water samples were size-fractionated and incubated in dialysis bags at the sampling site or transplanted into an area of the reservoir, which differed in phosphorus limitation (range of soluble reactive phosphorus concentrations--SRP, 0.7-96 microg l-1). Using five different rRNA-targeted oligonucleotide probes, net growth rates of the probe-defined bacterial groups and HNF assemblages were estimated and related to SRP using Monod kinetics, yielding growth rate constants specific for each bacterial group. We found highly significant differences among their maximum growth rates while insignificant differences were detected in the saturation constants. However, the latter constants represent only tentative estimates mainly due to insufficient sensitivity of the method used at low in situ SRP concentrations. Interestingly, in these same experiments HNF assemblages grew significantly faster than any bacterial group studied except for a small, but abundant cluster of Betaproteobacteria (targeted by the R-BT065 probe). Potential ecological implications of different growth capabilities for possible life strategies of different bacterial phylogenetic lineages are discussed.
'In late summer 1993 an intensive study was carried out on protozoan grazing in the epilimnion and metalimnion of the eutrophic Rimov Reservoir in south Bohemia. On average, -70% of bacterial production was consumed by heterotrophic flagellates and -20% by ciliates. Ciliate numbers increased from 5 to 70 cells ml l over the 5-week study period. Ciliates ~30 pm in size were numerically dominant in both layers and included Halteria grandinella and Strobilidium hexakinetum (Oligotrichida), Cyrtolophosis mucicola (Cyrtolophosida), Cinetochilum margaritaceum (Scuticociliatida), Urotricha spp., and Coleps sp. (Prostomatida). Ciliate species-specific grazing rates on bacteria and picocyanobacteria were determined. The highest individual cell grazing rates, 4,200 bacteria and 560 picocyanobacteria cell-' h-l, were observed in Vorticella aquadulcis-complex. Oligotrichs ingested on average 360-2,130 bacteria and 76
Recent advances in molecular technology have revolutionized research on all aspects of the biology of organisms, including ciliates, and created unprecedented opportunities for pursuing a more integrative approach to investigations of biodiversity. However, this goal is complicated by large gaps and inconsistencies that still exist in the foundation of basic information about biodiversity of ciliates. The present paper reviews issues relating to the taxonomy of ciliates and presents specific recommendations for best practice in the observation and documentation of their biodiversity. This effort stems from a workshop that explored ways to implement six Grand Challenges proposed by the International Research Coordination Network for Biodiversity of Ciliates (IRCN‐BC). As part of its commitment to strengthening the knowledge base that supports research on biodiversity of ciliates, the IRCN‐BC proposes to populate The Ciliate Guide, an online database, with biodiversity‐related data and metadata to create a resource that will facilitate accurate taxonomic identifications and promote sharing of data.
We studied the phylogenetic diversity of nonmarine picocyanobacteria broadening the sequence data set with 43 new sequences of the 16S rRNA gene. The sequences were derived from monoclonal strains isolated from four volcanic high-altitude athalassohaline lakes in Mexico, five glacial ultraoligotrophic North Patagonian lakes and six Italian lakes of glacial, volcanic and morenic origin. The new sequences fall into a number of both novel and previously described clades within the phylogenetic tree of 16S rRNA gene. The new cluster of Lake Nahuel Huapi (North Patagonia) forms a sister clade to the subalpine cluster II and the marine Synechococcus subcluster 5.2. Our finding of the novel clade of 'halotolerants' close to the marine subcluster 5.3 (Synechococcus RCC307) constitutes an important demonstration that euryhaline and marine strains affiliate closely. The intriguing results obtained shed new light on the importance of the nonmarine halotolerants in the phylogenesis of picocyanobacteria.
A limnological survey of eight small, atmospherically acidified, forested glacial lakes in the Bohemian Forest (Šumava, Böhmerwald) was performed in September 2003. Water chemistry of the tributaries and surface layer of each lake was determined, as well as species composition and biomass of the plankton along the water column, and littoral macrozoobenthos to assess the present status of the lakes. The progress in chemical reversal and biological recovery from acid stress was evaluated by comparing the current status of the lakes with results of a survey four years ago (1999) and former acidification data since the early 1990s. Both the current chemical lake status and the pelagic food web structure reflected the acidity of the tributaries and their aluminium (Al) and phosphorus (P) concentrations. One mesotrophic (Plešné jezero) and three oligotrophic lakes (Černé jezero, Čertovo jezero, and Rachelsee) are still chronically acidified, while four other oligotrophic lakes (Kleiner Arbersee, Prášilské jezero, Grosser Arbersee, and Laka) have recovered their carbonate buffering system. Total plankton biomass was very low and largely dominated by filamentous bacteria in the acidified oligotrophic lakes, while the mesotrophic lake had a higher biomass and was dominated by phytoplankton, which apparently profited from the higher P input. In contrast, both phytoplankton and crustacean zooplankton accounted for the majority of plankton biomass in the recovering lakes. This study has shown further progress in the reversal of lake water chemistry as well as further evidence of biological recovery compared to the 1999 survey. While no changes occurred in species composition of phytoplankton, a new ciliate species was found in one lake. In several lakes, this survey documented a return of zooplankton (e.g., Cladocera: Ceriodaphnia quadrangula and Rotifera: three Keratella species) and macrozoobenthos species (e.g., Ephemeroptera and Plecoptera). The beginning of biological recovery has been delayed for ∼20 years after chemical reversal of the lakes.
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