Active matter exemplified by suspensions of motile bacteria or synthetic self-propelled particles exhibits a remarkable propensity to self-organization and collective motion. The local input of energy and simple particle interactions often lead to complex emergent behavior manifested by the formation of macroscopic vortices and coherent structures with long-range order. A realization of an active system has been conceived by combining swimming bacteria and a lyotropic liquid crystal. Here, by coupling the well-established and validated model of nematic liquid crystals with the bacterial dynamics, we develop a computational model describing intricate properties of such a living nematic. In faithful agreement with the experiment, the model reproduces the onset of periodic undulation of the director and consequent proliferation of topological defects with the increase in bacterial concentration. It yields a testable prediction on the accumulation of bacteria in the cores of þ1=2 topological defects and depletion of bacteria in the cores of −1=2 defects. Our dedicated experiment on motile bacteria suspended in a freestanding liquid crystalline film fully confirms this prediction. Our findings suggest novel approaches for trapping and transport of bacteria and synthetic swimmers in anisotropic liquids and extend a scope of tools to control and manipulate microscopic objects in active matter.

Active matter exhibits remarkable collective behavior in which flows, continuously generated by active particles, are intertwined with the orientational order of these particles. The relationship remains poorly understood as the activity and order are difficult to control independently. Here we demonstrate important facets of this interplay by exploring dynamics of swimming bacteria in a liquid crystalline environment with pre-designed periodic splay and bend in molecular orientation. The bacteria are expelled from the bend regions and condense into polar jets that propagate and transport cargo unidirectionally along the splay regions. The bacterial jets remain stable even when the local concentration exceeds the threshold of bending instability in a non-patterned system. Collective polar propulsion and different role of bend and splay are explained by an advection-diffusion model and by numerical simulations that treat the system as a two-phase active nematic. The ability of prepatterned liquid crystalline medium to streamline the chaotic movements of swimming bacteria into polar jets that can carry cargo along a predesigned trajectory opens the door for potential applications in cell sorting, microscale delivery and soft microrobotics.

Living nematic is a realization of an active matter combining a nematic liquid crystal with swimming bacteria. The material exhibits a remarkable tendency towards spatio-temporal self-organization manifested in formation of dynamic textures of self-propelled half-integer topological defects (disclinations). Here we report on the study of such living nematic near normal inclusions, or tactoids, naturally realized in liquid crystals close to the isotropic-nematic (I-N) phase transition. On the basis of the computational analysis, we have established that tactoid's I-N interface spontaneously acquire negative topological charge which is proportional to the tactoid's size and depends on the concentration of bacteria. The observed negative charging is attributed to the drastic difference in the mobilities of +1/2 and −1/2 topological defects in active systems. The effect is described in the framework of a kinetic theory for point-like weakly-interacting defects with different mobilities. Our dedicated experiment fully confirmed the theoretical prediction. The results hint into new strategies for control of active matter.

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Active systems comprised of self-propelled units show fascinating transitions from Brownian-like dynamics to collective coherent motion. Swirling of swimming bacteria is a spectacular example. This study demonstrates that a nematic liquid crystal environment patterned as a spiral vortex controls individual-to-collective transition in bacterial swirls and defines whether they expand or shrink. In dilute dispersions, the bacteria swim along open spiral trajectories, following the pre-imposed molecular orientation. The trajectories are nonpolar. As their concentration exceeds some threshold, the bacteria condense into unipolar circular swirls resembling stable limit cycles. This collective circular motion is controlled by the spiral angle that defines the splay-to-bend ratio of the background director. Vortices with dominating splay shrink the swirls towards the center, while vortices with dominating bend expand them to the periphery. 45 o spiraling vortices with splay-bend parity produce the most stable swirls. All the dynamic scenarios are explained by hydrodynamic interactions of bacteria mediated by the patterned passive nematic environment and by the coupling between the concentration and orientation. The acquired knowledge of how to control individual and collective motion of microswimmers by a nematic environment can help in the development of microscopic mechanical systems.