The pine-dominated forests of west-central Mexico are internationally recognized for their high biodiversity, and some areas are protected through various conservation measures including prohibition of human activity. In this region, however, there is evidence for human settlement dating back to ca. AD 1200. It is therefore unclear whether the present forest composition and structure are part of a successional stage following use by indigenous human populations during the past, or due to natural processes, such as climate. We present a study reconstructing the vegetation dynamics of pine-dominated forest over the past 4200 years using paleoecological techniques. Results from fossil pollen and charcoal indicate that, in this region, pine-dominated forests are the native vegetation type and not anthropogenically derived secondary succession. The predominant driving mechanism for the expansion of pine-dominated forest appears to be intervals of aridity and naturally induced burning. A close association is noted between pine abundance and longer-term climatic trends, including intervals of aridity between ca. 4200 and 2500, 1200 and 850, and 500 and 200 cal yr BP and shorter-term trends. Evident periodicity occurs in pine and Poaceae abundance every 80 years. These short-term quasi-periodic oscillations have been recorded in a number of lake and ocean sediments in Mexico and are thought to be linked to solar forcing resulting in drought cycles that occur at approximately the same time intervals.

Detailed information on 38 species and 26 environmental variables was recorded from a network of 86 permanent plots across a geographical range of 10 km, in order to determine the patterns of floristic composition in Quercus-dominated forests; to elucidate environmental differentiation in such forests; and to determine whether species are partitioning their environment. To examine likely patterns of floristic composition, a data matrix expressed as relative volume ? relative density was used to run non-metric multidimensional scaling. Canonical correspondence analysis extracted the environmental variation that best correlates with the observed patterns of floristic composition. Our results indicate that congeneric Quercus individuals represent the largest proportion of the species pool in the study plots. They coexist with other species having similar ecological requirements in at least three distinct floristic groups. Examination of the two largest groups and their species compositions reveals that one floristic gradient runs across the most xeric zone of the study area, and the second major floristic gradient runs across a mesic zone. The most important environmental variable explaining the observed patterns of floristic composition is altitude, although partial canonical correspondence analysis suggests that micro-habitat heterogeneity (catena position and canopy maturity) was most significant.

Key questions for understanding the resilience and variability of Mexican Neotropical cloud forest assemblages in current and future climate change include: How have human disturbances and climate change affected the dynamics of the cloud forest assemblage? What are the predominant processes responsible for its present day composition and distribution? Are the current conservation strategies for the cloud forest in accordance with preserving its natural variability through time? In this study, the temporal dynamics of the cloud forest in west-central Mexico over the last $ 1300 years were reconstructed using palaeoecological techniques. These included analyses of fossil pollen, microfossil charcoal, and sediment geochemistry. Results indicated that a cloud forest assemblage has been the predominant vegetation type in this region over the last $ 1300 years. During this time, however, there have been changes in the vegetation with an apparent expansion of cloud forest from $ 832 to 620 cal years BP and a decline from 1200 to 832 cal years BP. Climate change (intervals of aridity) and human disturbances through anthropogenic burning appear to have been the main factors influencing the dynamics of this cloud forest. The spatial heterogeneity reported for high-altitude forests in this region, in concert with high beta diversity, appears to be a manifestation of the high temporal variability in species composition for these forests. Greater turnover in cloud forest taxa occurred during intervals of increased humidity and is probably representative of a higher temporal competition for resources among the cloud forest taxa. The present results support the current protection scheme for cloud forests in west-central Mexico where areas are kept in exclusion zones to avoid timber extraction, grazing, and agriculture; this will maintain diversity within these forests, even if there are only a few individuals per species, and enable the forests to retain some resilience to current and future climate change.

The determination of past successional stages, as well as the factors triggering succession, is crucial for the understanding of forest dynamics and the design of current and future management and conservation strategies. Shifts between successional stages can take decades or even centuries to occur because of tree longevity; therefore palaeoecological studies are important tools for their study. The present research involved the palaeoreconstruction of a transitional forest dominated by Pinus-Carpinus-Quercus in west-central Mexico over the last ~1230 years. The proxies employed include fossil pollen, microscopic fossil charcoal, magnetic susceptibility and organic matter content evaluated by multivariate techniques. The findings reveal that an initial cloud forest stage developed from 1230 to 1050 cal. yr BP. This stage was then interrupted for ~400 years (1050–690 cal. yr BP) when a regional climate change event decreased the number of cloud forest taxa and increased herbaceous taxa including Asteraceae, Poaceae, Plantago and Zea. The cloud forest stage recovered at 690 cal. yr BP and the community has persisted to the present time, yet this stage is dominated by human-induced taxa such as Pinus and Acacia. Whilst the dynamics of individual taxa were related to forest fires and soil erosion, changes between community types were related to an interval of regional climate change (greater aridity) that occurred between 1050 and 690 cal. yr BP. Results from this study indicate that, in order to preserve the cloud forest stage, human disturbances such as logging and agriculture should be excluded; a conservation strategy established in the transitional forest in recent years.

Biodiversity research and conservation efforts in the tropics are hindered by the lack of knowledge of the assemblages found there, with many species undescribed or poorly known. Our initiative, the Tree Biodiversity Network (BIOTREE-NET), aims to address this problem by assembling georeferenced data from a wide range of sources, making these data easily accessible and easily queried, and promoting data sharing. The database (GIVD ID NA-00-002) currently comprises ca. 50,000 tree records of ca. 5,000 species (230 in the IUCN Red List) from >2,000 forest plots in 11 countries. The focus is on trees because of their pivotal role in tropical forest ecosystems (which contain most of the world's biodiversity) in terms of ecosystem function, carbon storage and effects on other species. BIOTREE-NET currently focuses on southern Mexico and Central America, but we aim to expand coverage to other parts of tropical America. The database is relational, comprising 12 linked data tables. We summarise its structure and contents. Key tables contain data on forest plots (including size, location and date(s) sampled), individual trees (including diameter, when available, and both recorded and standardised species name), species (including biological traits of each species) and the researchers who collected the data. Many types of queries are facilitated and species distribution modelling is enabled. Examining the data in BIOTREE-NET to date, we found an uneven distribution of data in space and across biomes, reflecting the general state of knowledge of the tropics. More than 90% of the data were collected since 1990 and plot size varies widely, but with most less than one hectare in size. A wide range of minimum sizes is used to define a 'tree'. The database helps to identify gaps that need filling by further data collection and collation. The data can be publicly accessed through a web application at http://portal.biotreenet.com. Researchers are invited and encouraged to contribute data to BIOTREE-NET.