Summary1. In the face of natural complexities and multicollinearity, model selection and predictions using multiple regression may be ambiguous and risky. Confounding effects of predictors often cloud researchers' assessment and interpretation of the single best 'magic model'. The shortcomings of stepwise regression have been extensively described in statistical literature, yet it is still widely used in ecological literature. Similarly, hierarchical regression which is thought to be an improvement of the stepwise procedure, fails to address multicollinearity. 2. We propose that regression commonality analysis (CA), a technique more commonly used in psychology and education research will be helpful in interpreting the typical multiple regression analyses conducted on ecological data. 3. CA decomposes the variance of R 2 into unique and common (or shared) variance (or effects) of predictors, and hence, it can significantly improve exploratory capabilities in studies where multiple regressions are widely used, particularly when predictors are correlated. CA can explicitly identify the magnitude and location of multicollinearity and suppression in a regression model. In this paper, using a simulated (from a correlation matrix) and an empirical dataset (human habitat selection, migration of Canadians across cities), we demonstrate how CA can be used with correlated predictors in multiple regression to improve our understanding and interpretation of data. We strongly encourage the use of CA in ecological research as a follow-on analysis from multiple regressions.
The endemic South African velvet worm genus Peripatopsis currently contains eight recognized species described from variable morphological characters and the current taxonomy is unsatisfactory. In an attempt to investigate evolutionary relationships within Peripatopsis, we collected 137 individuals from 34 sample localities for six of the eight species. Sequence data derived from two partial mitochondrial (mt)DNA gene loci (COI and 12S rRNA), as well as partial sequence data from the ribosomal nuclear 18S rDNA locus in combination with gross morphological characters and scanning electron microscopy (SEM), was used to examine evolutionary relationships. Phylogenetic relationships were investigated using minimum evolution (ME) and Bayesian inferences (BI). Additionally, we also undertook a maximum likelihood (ML) analyses on the combined DNA sequence data set. The combined DNA evidence topologies derived from the ME, BI, and ML was highly congruent and was characterized by the presence of multiple lineages within recognized taxa. Peripatopsis clavigera, Peripatopsis moseleyi, and Peripatopsis sedgwicki each comprised two evolutionary lineages; Peripatopsis capensis comprised three; and Peripatopsis balfouri comprised six operational taxonomic units respectively. Genealogical exclusivity at both mtDNA and nuclear DNA among the geographically coherent groups coupled with pronounced sequence divergence suggested a two-fold increase in the number of species within Peripatopsis. Previously used gross morphological characters (such as the number of leg pairs and colour) were either highly variable within operational taxonomic units, or were invariant, suggesting that alternative morphological characters are necessary for species discrimination. SEM results revealed potentially useful diagnostic characters that can discriminate between at least discriminate some of the newly-identified lineages.
Species' distributions, assemblage patterns and the processes influencing these are poorly understood, and urgently require study. Use of volunteers to collect data is becoming increasingly common in biodiversity research. We assess the effectiveness of volunteers sampling terrestrial savanna invertebrates in comparison to experienced researchers, and examine the potential contribution of volunteers to terrestrial invertebrate surveys. There were relatively few differences in the diversity sampled by 54 Earthwatch Institute volunteers when compared to expert researchers. The major difference was in the results from the less spatially constrained method, where experience (microhabitat selection) most affected results, and experienced researchers performed better both quantitatively (more species sampled) and qualitatively (more unique and rare species). For the more constrained and less subjective methods, our training enabled the volunteers to quickly equal the experienced experts. Volunteers' experience in invertebrate research influenced both the researchers' perceptions of volunteers' capacity and the actual performance of the volunteers. This suggests that appropriate training for the methods used can help to improve volunteers' success with the sampling. We demonstrated that volunteers collect valid data; for the most part they sample invertebrates as effectively as a trained researcher, and that using volunteers has enormous direct benefits in terms of volume of work accomplished. For invertebrate studies using volunteers, we recommend that the subjectivity of the method be minimised, that experience is compensated for by increasing volunteer effort (two volunteers = one researcher), and that there is close management of volunteers in the field to ensure ongoing data quality. Volunteers provide a valuable resource to researchers carrying out biodiversity surveys, but using volunteers to carry out a scientifically sound project is not an easy option, and should only be implemented when volunteers would make a meaningful contribution and enable an otherwise impossible project.
Open access to sequence data is a cornerstone of biology and biodiversity research, but has created tension under the United Nations Convention on Biological Diversity (CBD). Policy decisions could compromise research and development, unless a practical multilateral solution is implemented.Here, we lay out a framework for use of digital sequence information (DSI) that enables fair benefit-sharing, ensures open access to sequence data, strengthens biodiversity conservation and sustainable use, and leverages genomics and bioinformatics for international capacity-building. As Parties to the CBD meet again in-person in the coming months to negotiate the Global Biodiversity Framework, they must apply pragmatic, multilateral solutions to DSI that improve rather than impede global biodiversity targets.The ability to decode and digitally archive DNA has revolutionized the life sciences and related fields. Sequence data, referred to as digital sequence information (DSI) in policy
Belowground biodiversity Taxonomy Endemism (6.4 and 7.7%) proportion of globally described diversity. Endemism is high for most groups, ranging from 33-92%. However, major knowledge gaps exist for most soil biota groups. While sampling has been relatively comprehensive in some areas for a few groups (particularly those with direct socioeconomic impacts), the Nama-Karoo, Northern Cape and Eastern Cape are poorly sampled. Natural soils in biodiversity hotspots, such as the Fynbos Biome, are also understudied. We argue that a more integrative approach to acquiring foundational knowledge in soil biodiversity is needed if applied soil research is to be effective in ensuring sustainable soil health. Considerable investment will be required to bring our understanding of the soil biodiversity in this megadiverse region to a level where the Millennium Development Goals can be reached.
Invertebrates constitute a substantial proportion of terrestrial and freshwater biodiversity and are critical to ecosystem function. However, their inclusion in biodiversity monitoring and conservation planning and management has lagged behind better-known, more widely appreciated taxa. Significant progress in invertebrate surveys, systematics and bioindication, both globally and locally, means that their use in biodiversity monitoring and conservation is becoming increasingly feasible. Here we outline challenges and solutions to the integration of invertebrates into biodiversity management objectives and monitoring in protected areas in South Africa. We show that such integration is relevant and possible, and assess the relative suitability of seven key taxa in this context. Finally, we outline a series of recommendations for mainstreaming invertebrates in conservation planning, surveys and monitoring in and around protected areas.<p><strong>Conservation implications:</strong> Invertebrates constitute a substantial and functionally significant component of terrestrial biodiversity and are valuable indicators of environmental condition. Although consideration of invertebrates has historically been neglected in conservation planning and management, substantial progress with surveys, systematics and bioindication means that it is now both feasible and advisable to incorporate them into protected area monitoring activities.</p><p><strong>How to cite this article:</strong> McGeoch, M.A., Sithole, H., Samways, M.J., Simaika, J.P., Pryke, J.S., Picker, M., <em>et al</em>., 2011, ‘Conservation and monitoring of invertebrates in terrestrial protected areas’, <em>Koedoe</em> 53(2), Art. #1000, 13 pages. doi:10.4102/koedoe.v53i2.1000</p>
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