The entanglement entropy of a subsystem A of a quantum system is expressed, in the replica approach, through analytic continuation with respect to n of the trace of the n−th power of the reduced density matrix. This trace can be thought of as the vacuum expectation value of a suitable observable in a system made with n independent copies of the original system. We use this property to numerically evaluate it in some twodimensional critical systems, where it can be compared with the results of Calabrese and Cardy, who wrote the same quantity in terms of correlation functions of twist fields of a conformal field theory. Although the two calculations match perfectly even in finite systems when the system A consists of a single interval, they disagree whenever the subsystem A is composed of more than one connected part. The reasons of this disagreement are explained.

Fluctuating filaments, from densely-packed biopolymers to defect lines in structured fluids, are prone to become interlaced and form intricate architectures. Understanding the ensuing mechanical and relaxation properties depends critically on being able to capture such entanglement in quantitative terms. So far, this has been an elusive challenge. Here we introduce the first general characterization of non-ephemeral forms of entanglement in linear curves by introducing novel descriptors that extend topological measures of linking from close to open curves. We thus establish the concept of physical links. This general method is applied to diverse contexts: equilibrated ring polymers, mechanically-stretched links and concentrated solutions of linear chains. The abundance, complexity and space distribution of their physical links gives access to a whole new layer of understanding of such systems and open new perspectives for others, such as reconnection events and topological simplification in dissipative fields and defect lines.

Recent theoretical and experimental advances have clarified the major effects of knotting on the properties of stretched chains. Yet, how knotted chains respond to weak mechanical stretching and how this behavior differs from the unknotted case are still open questions and we address them here by profiling the complete stretching response of chains of hundreds of monomers and different topology. We find that the ratio of the knotted and unknotted chain extensions varies nonmonotonically with the applied force. This surprising feature is shown to be a signature of the crossover between the well-known high-force stretching regime and the previously uncharacterized low-force one. The observed differences of knotted and unknotted chain response increases with knot complexity and are sufficiently marked that they could be harnessed in single-molecule contexts to infer the presence and complexity of physical knots in micron-long biomolecules.