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BackgroundGenomic selection (GS) can offer unprecedented gains, in terms of cost efficiency and generation turnover, to forest tree selective breeding; especially for late expressing and low heritability traits. Here, we used: 1) exome capture as a genotyping platform for 1372 Douglas-fir trees representing 37 full-sib families growing on three sites in British Columbia, Canada and 2) height growth and wood density (EBVs), and deregressed estimated breeding values (DEBVs) as phenotypes. Representing models with (EBVs) and without (DEBVs) pedigree structure. Ridge regression best linear unbiased predictor (RR-BLUP) and generalized ridge regression (GRR) were used to assess their predictive accuracies over space (within site, cross-sites, multi-site, and multi-site to single site) and time (age-age/ trait-trait).ResultsThe RR-BLUP and GRR models produced similar predictive accuracies across the studied traits. Within-site GS prediction accuracies with models trained on EBVs were high (RR-BLUP: 0.79–0.91 and GRR: 0.80–0.91), and were generally similar to the multi-site (RR-BLUP: 0.83–0.91, GRR: 0.83–0.91) and multi-site to single-site predictive accuracies (RR-BLUP: 0.79–0.92, GRR: 0.79–0.92). Cross-site predictions were surprisingly high, with predictive accuracies within a similar range (RR-BLUP: 0.79–0.92, GRR: 0.78–0.91). Height at 12 years was deemed the earliest acceptable age at which accurate predictions can be made concerning future height (age-age) and wood density (trait-trait). Using DEBVs reduced the accuracies of all cross-validation procedures dramatically, indicating that the models were tracking pedigree (family means), rather than marker-QTL LD.ConclusionsWhile GS models’ prediction accuracies were high, the main driving force was the pedigree tracking rather than LD. It is likely that many more markers are needed to increase the chance of capturing the LD between causal genes and markers.

The amplified, extrachromosomal nucleoli of Xenopus oocytes contain a meshwork of -4-nm-thick filaments, which are densely coiled into higher-order fibrils of diameter 30-40 nm and are resistant to treatment with high-and low-salt concentrations, nucleases (DNase I, pancreatic RNase, micrococcal nuclease), sulfhydryl agents, and various nonionic detergents . This filamentous "skeleton" has been prepared from manually isolated nuclear contents and nucleoli as well as from nucleoli isolated by fluorescence-activated particle sorting. The nucleolar skeletons are observed in light and electron microscopy and are characterized by ravels of filaments that are especially densely packed in the nucleolar cortex . DNA as well as RNA are not constituents of this structure, and precursors to ribosomal RNAs are completely removed from the extraction-resistant filaments by treatment with high-salt buffer or RNase. Fractions of isolated nucleolar skeletons show specific enrichment of an acidic major protein of 145,000 mol wt and an apparent pl value of -6 .15, accompanied in some preparations by various amounts of minor proteins . The demonstration of this skeletal structure in "free" extrachromosomal nucleoli excludes the problem of contaminations by nonnucleolar material such as perinucleolar heterochromatin normally encountered in studies of nucleoli from somatic cells . It is suggested that this insoluble protein filament complex forms a skeleton specific to the nucleolus proper that is different from other extraction-resistant components of the nucleus such as matrix and lamina and is involved in the spatial organization of the nucleolar chromatin and its transcriptional products .In studies of the organization of the interphase nucleus, considerable progress has been made in the elucidation of the arrangement of chromatin components and transcriptional products . However, relatively little is known about the composition and function of another category of nuclear structures, the nonnucleoproteinaceous architectural components that are insoluble in solutions of low and high ionic strength, despite numerous studies dedicated to this problem . Such structures include (a) the nuclear envelope and its pore complexes (1,15,18,23,37,41), (b) a peripheral layer of insoluble protein ("lamina" ; 1, 15, 22, 23, 59), (c) certain skeletal proteins related to the chromosome "scaffold" described by Laemmli and coworkers (see references 2 and 3), and (d) ill-defined tangles of fibrillar structures of the nuclear interior that are collectively described as residual "matrix" (6, 21 ; for reviews, see references THE JOURNAL OF CELL BIOLOGY " VOLUME 90 AUGUST 1981 289-299©The Rockefeller University Press -0021-9525/81/08/0289/11 $1 .00 4 and 12) . The latter, preparatively defined insoluble structures that in most preparations included residual nucleolar material (7,9,13,31,46), showed a remarkable heterogeneity of both electron microscopically identified components and polypeptides. In nuclear matrix fractions from several somatic...

The genetic control and phenotypic and genotypic correlations among wood density, modulus of elasticity, height, diameter, and volume were assessed using 967 trees representing 20 unrelated 32-year-old coastal Douglas-fir full-sib families growing on four (spaced and pruned vs. control) comparable test sites. Generally, no significant differences were observed between treatments, indicating their limited effect at assessment time. Family effect did not differ for the growth traits; however, significant differences were observed for wood density and both in situ methods (drilling resistance and acoustic velocity). Growth and wood quality attributes, individually, produced high and positive phenotypic and genetic correlations; however, high and negative correlations were observed between individual variables belonging to the two suites of attributes. Individual tree heritabilities were low for growth (0.04 to 0.08) and modest to high for wood quality attributes (0.14 to 0.68). The observed heritabilities and phenotypic and genotypic correlations imply modest to strong genetic control; however, they operated in opposing direction. The significant and consistent genetic correlations between the in situ methods and wood density and stiffness support their use as a non-destructive and economic assessment approach. The reliability of the in situ assessments was verified through cumulative pith-tobark wood density assessment, resulting in inconsistent genetic and phenotypic correlations for early growth years. These latter findings imply that caution should be used in employing these in situ techniques as early screening tools in breeding programs.

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