Arctic tundra has large amounts of stored carbon and is thought to be a sink for atmospheric carbon dioxide (CO(2)) (0.1 to 0.3 petagram of carbon per year) (1 petagram = 10(15) grams). But this estimate of carbon balance is only for terrestrial ecosystems. Measurements of the partial pressure of CO(2) in 29 aquatic ecosystems across arctic Alaska showed that in most cases (27 of 29) CO(2) was released to the atmosphere. This CO(2) probably originates in terrestrial environments; erosion of particulate carbon plus ground-water transport of dissolved carbon from tundra contribute to the CO(2) flux from surface waters to the atmosphere. If this mechanism is typical of that of other tundra areas, then current estimates of the arctic terrestrial sink for atmospheric CO(2) may be 20 percent too high.

A continuous pollen history of more than 40,000 years was obtained from a lake in the lowland Amazon rain forest. Pollen spectra demonstrate that tropical rain forest occupied the region continuously and that savannas or grasslands were not present during the last glacial maximum. The data suggest that the western Amazon forest was not fragmented into refugia in glacial times and that the lowlands were not a source of dust. Glacial age forests were comparable to modern forests but also included species now restricted to higher elevations by temperature, suggesting a cooling of the order of 5° to 6°C.

Phosphorus fertilization of a pristine tundra river for four consecutive summers dramatically changed biological processes and populations at all trophic levels. At the primary producer level, both algal biomass and productivity increased and chlorophyll accumulated on the river bottom in the first two summers. Diatom community composition changed little in spite oflarge chlorophyll changes. However, an increase in grazing insects prevented chlorophyll buildup in the third and fourth summers.Some microbial processes were also stimulated by the increased photosynthesis caused by fertilization. Total respiration of the epilithon, acetate uptake, and decomposition of lignin monomers were all stimulated but only in light-grown epilithon. When epilithon was grown in the dark in the fertilized region of the river, there was no increased respiration. Also, phosphorus did not stimulate the decomposition of Carex litter.Although insects grew more rapidly in the fertilized section of the river, there were community interactions that kept total insect production from appreciable change. The four most abundant large insects did increase their growth rates in response to phosphorus addition and there were increases in populations of Baetis lapponicus and Brachycentrus americanus. These increases were offset by the decline in abundance of the dominant species, the black fly Prosimulium martini, perhaps caused by competition for space from Brachycentrus.Growth of both young-of-the-year and adult grayling (Thymallus arcticus) was strongly stimulated by phosphorus addition in years 3 and 4 (not tested in years 1 and 2). Carbon and nitrogen stable isotope tracers indicated that the measured increases in insect and fish growth were largely attributable to increases in the production of epilithic algae. Overall, the results indicate a strong "bottom-up" response of the riverine food web to additions of the limiting nutrient, phosphorus. The response was modified in later years, however, by a strong "top-down" feedback of insects grazing on epilithic algae and by competitive exclusion of black flies by caddisflies.

The factors that determine the conformation and stability of G-quadruplex forming sequences remain poorly understood. Here we demonstrate the influence of cosolvents on the conformation and stability of the human telomeric sequence d(A(GGGTTA)3GGG)) in both K(+) and Na(+) containing solutions using a combination of circular dichroism, NMR, and thermodynamics. Molecular crowding arguments have previously been used to suggest that the parallel quadruplex form may be biologically relevant. However, the small cosolvents previously used, PEG 200 and 400, are actually dehydrating agents. We have used acetonitrile as a non-hydrogen-bonding dehydrating agent; similar conformational transitions were observed in K(+) solution. Moreover, NMR analysis shows that the resulting structure contains non-anti guanine glycosyl torsion angles suggesting that the conformation present in acetonitrile is not identical to the all-parallel crystal structure, despite the supposed parallel type CD spectrum.

The pathogenic spirochete Leptospira interrogans disseminates throughout its hosts via the bloodstream, then invades and colonizes a variety of host tissues. Infectious leptospires are resistant to killing by their hosts' alternative pathway of complement-mediated killing, and interact with various host extracellular matrix (ECM) components. The LenA outer surface protein (formerly called LfhA and Lsa24) was previously shown to bind the host ECM component laminin and the complement regulators factor H and factor H-related protein-1. We now demonstrate that infectious L. interrogans contain five additional paralogs of lenA, which we designated lenB, lenC, lenD, lenE and lenF. All six genes encode domains predicted to bear structural and functional similarities with mammalian endostatins. Sequence analyses of genes from seven infectious L. interrogans serovars indicated development of sequence diversity through recombination and intragenic duplication. LenB was found to bind human factor H, and all of the newly-described Len proteins bound laminin. In addition, LenB, LenC, LenD, LenE and LenF all exhibited affinities for fibronectin, a distinct host extracellular matrix protein. These characteristics suggest that Len proteins together facilitate invasion and colonization of host tissues, and protect against host immune responses during mammalian infection.

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Partial pressures of CO 2 and CH 4 were measured directly or calculated from pH and alkalinity or DIC measurements for 25 lakes and 4 rivers on the North Slope of Alaska. Nearly all waters were supersaturated with respect to atmospheric pressures of CO 2 and CH 4 . Gas fluxes to the atmosphere ranged from -6.5 to 59.8 mmol m -2 d-1 for CO 2 and from 0.08 to 1.02 mmol m -2 d-' for CH 4 , and were uncorrelated with latitude or lake morphology. Seasonal trends include a buildup of CO 2 and CH 4 under ice during winter, and often an increased CO 2 flux rate in August due to partial lake turnover. Nutrient fertilization experiments resulted in decreased CO 2 release from a lake due to photosynthetic uptake, but no change in CO 2 release from a river due to the much faster water renewal time. In lakes and rivers the groundwater input of dissolved CO 2 and CH 4 is supplemented by in-lake respiration of dissolved and particulate carbon washed in from land. The release of carbon from aquatic systems to the atmosphere averaged 24 g C m-2 y-1, and in coastal areas where up to 50 % of the surface area is water, this loss equals /5 to /2 of the net carbon accumulation rates estimated for tundra.

Vibrio cholerae causes a severe diarrhoeal disease by secreting a toxin during colonization of the epithelium in the small intestine. Whereas the initial steps of the infectious process have been intensively studied, the last phases have received little attention. Confocal microscopy of V. cholerae O1-infected rabbit ileal loops captured a distinctive stage in the infectious process: 12 h post-inoculation, bacteria detach from the epithelial surface and move into the fluid-filled lumen. Designated the “mucosal escape response,” this phenomenon requires RpoS, the stationary phase alternative sigma factor. Quantitative in vivo localization assays corroborated the rpoS phenotype and showed that it also requires HapR. Expression profiling of bacteria isolated from ileal loop fluid and mucus demonstrated a significant RpoS-dependent upregulation of many chemotaxis and motility genes coincident with the emigration of bacteria from the epithelial surface. In stationary phase cultures, RpoS was also required for upregulation of chemotaxis and motility genes, for production of flagella, and for movement of bacteria across low nutrient swarm plates. The hapR mutant produced near-normal numbers of flagellated cells, but was significantly less motile than the wild-type parent. During in vitro growth under virulence-inducing conditions, the rpoS mutant produced 10- to 100-fold more cholera toxin than the wild-type parent. Although the rpoS mutant caused only a small over-expression of the genes encoding cholera toxin in the ileal loop, it resulted in a 30% increase in fluid accumulation compared to the wild-type. Together, these results show that the mucosal escape response is orchestrated by an RpoS-dependent genetic program that activates chemotaxis and motility functions. This may furthermore coincide with reduced virulence gene expression, thus preparing the organism for the next stage in its life cycle.