Background: Body weight variability is thought to be an indicator of poor health outcomes, including cardiovascular disease (CVD) and mortality. Given that the vast majority of NAFLD patients have difficulty maintaining weight loss and CVD is closely associated with NAFLD, the investigation of the influence of body weight variability on CVD and mortality in NAFLD patients is crucial to prevent the deleterious consequences of NAFLD. We investigated the association between body weight variability and the risks of CVD and mortality in patients with NAFLD using large-scale, nationwide cohort data. Methods: We included 726,736 individuals with NAFLD who underwent a health examination provided by the Korean National Health Insurance System between 2009 and 2010, with follow-up through the end of 2017. NAFLD was defined as a fatty liver index ≥60, after excluding excess alcohol intake, viral hepatitis, and alcoholic cirrhosis. Significant liver fibrosis was defined as a BARD score ≥2. Body weight variability was assessed using four indices, including variability independent of the mean (VIM). A multivariate-adjusted Cox proportional hazards regression analysis was performed. Results: During a median 8.1-year follow-up , we documented 11,358, 14,714, and 22,164 cases of myocardial infarction (MI), stroke, and all-cause mortality, respectively. Body weight variability was associated with an increased risk of MI, stroke, and mortality after adjusting for confounding variables. The hazard ratios (HRs) (95% confidence intervals) for the highest quartile, compared with the lowest quartile, of VIM for body weight were 1.15 (1.10–1.20), 1.22 (1.18–1.26), and 1.56 (1.53–1.62) for MI, stroke, and all-cause mortality, respectively. When examined jointly, the risk of outcomes was highest among NAFLD patients with both significant liver fibrosis and the highest VIM for body weight.Conclusions: Body weight variability was associated with increased risks of MI, stroke, and all-cause mortality in NAFLD patients. Appropriate interventions to maintain a stable weight could positively affect health outcomes in NAFLD patients.