No abstract

BackgroundRecent climatic history has strongly impacted plant populations, but little is known about its effect on microbes. Alders, which host few and specific symbionts, have high genetic diversity in glacial refugia. Here, we tested the prediction that communities of root symbionts survived in refugia with their host populations. We expected to detect endemic symbionts and a higher species richness in refugia as compared to recolonized areas.MethodsWe sampled ectomycorrhizal (EM) root tips and the nitrogen-fixing actinomycete Frankia communities in eight sites colonized by Alnus glutinosa subsp. barbata close to the Caucasus in Georgia. Three sites were located in the Colchis, one major Eurasian climatic refugia for Arcto-Tertiary flora and alders, and five sites were located in the recolonized zone. Endemic symbionts and plant ITS variants were detected by comparing sequences to published data from Europe and another Tertiary refugium, the Hyrcanian forest. Species richness and community structure were compared between sites from refugia and recolonized areas for each symbionts.ResultsFor both symbionts, most MOTUs present in Georgia had been found previously elsewhere in Europe. Three endemic Frankia strains were detected in the Colchis vs two in the recolonized zone, and the five endemic EM fungi were detected only in the recolonized zone. Frankia species richness was higher in the Colchis while the contrary was observed for EM fungi. Moreover, the genetic diversity of one alder specialist Alnicola xanthophylla was particularly high in the recolonized zone. The EM communities occurring in the Colchis and the Hyrcanian forests shared closely related endemic species.DiscussionThe Colchis did not have the highest alpha diversity and more endemic species, suggesting that our hypothesis based on alder biogeography may not apply to alder’s symbionts. Our study in the Caucasus brings new clues to understand symbioses biogeography and their survival in Tertiary and ice-age refugia, and reveals that isolated host populations could be of interest for symbiont diversity conservation.

Succession is generally well described above-ground in the boreal forest, and several studies have demonstrated the role of interspecific facilitation in tree species establishment. However, the role of mycorrhizal communities for tree establishment and interspecific facilitation, has been little explored. At the ecotone between the mixed boreal forest, dominated by balsam fir and hardwood species, and the boreal forest, dominated by black spruce, several stands of trembling aspen can be found, surrounded by black spruce forest. Regeneration of balsam fir seems to have increased in the recent decades within the boreal forest, and it seems better adapted to grow in trembling aspen stands than in black spruce stands, even when located in similar abiotic conditions. As black spruce stands are also covered by ericaceous shrubs, we investigated if differences in soil fungal communities and ericaceous shrubs abundance could explain the differences observed in balsam fir growth and nutrition. We conducted a study centered on individual saplings to link growth and foliar nutrient concentrations to local vegetation cover, mycorrhization rate, and mycorrhizal communities associated with balsam fir roots. We found that foliar nutrient concentrations and ramification indices (colonization by mycorrhiza per length of root) were greater in trembling aspen stands and were positively correlated to apical and lateral growth of balsam fir saplings. In black spruce stands, the presence of ericaceous shrubs near balsam fir saplings affected ectomycorrhizal communities associated with tree roots which in turn negatively correlated with N foliar concentrations. Our results reveal that fungal communities observed under aspen are drivers of balsam fir early growth and nutrition in boreal forest stands and may facilitate ecotone migration in a context of climate change.

We investigated whether the diversity, endemicity and specificity of alder symbionts could be changed by isolation in a Mediterranean glacial refugium. We studied both ectomycorrhizal (EM) fungi and nitrogen-fixing actinobacteria associated with alders, and compared their communities in Corsica and on the European continent. Nodules and root tips were sampled on the three alder species present in Corsica and continental France and Italy. Phylogenies based on internal transcribed spacer (ITS) and a multilocus sequence analysis approach were used to characterize fungal and Frankia species, respectively. Patterns of diversity, endemism and specialization were compared between hosts and regions for each symbiont community. In Corsica, communities were not generally richer than on the mainland. The species richness per site depended mainly on host identity: Alnus glutinosa and Alnus cordata hosted richer Frankia and EM communities, respectively. Half of the Frankia species were endemic to Corsica against only 4% of EM species. Corsica is not a hotspot of diversity for all alder symbionts but sustains an increased frequency of poor-dispersers such as hypogeous fungi. Generalist EM fungi and host-dependent profusely sporulating (Sp+) Frankia were abundantly associated with Corsican A. cordata, a pattern related to a more thermophilic and xerophylic climate and to the co-occurrence with other host trees.

Research highlights: To understand differences in the establishment of balsam fir regeneration observed in the boreal forest, we examined how soil layer and microorganisms explained differences in growth and mycorrhization in three different stand types. Our experiment revealed positive and negative effects on growth of seedlings, and highlights the importance of biotic interactions in balsam fir establishment. Background and Objectives: In a context of climate change, understanding tree migration can be examined through changes in tree regeneration. At the ecotone between mixed and conifer boreal forest, regeneration of balsam fir northward is of particular interest because it thrives better under aspen-dominated stands as compared to adjacent spruce-dominated stands. As the understorey differs between these stands, with more Ericaceae under spruce and different ectomycorrhizal fungal communities in organic and mineral horizons, we hypothesized that biotic factors could explain differences in balsam fir establishment. Materials and Methods: Using a growth chamber experiment, we tested if differences in soil layers and modification of soil fungal communities would affect germination, mycorrhization, and growth of balsam fir seedlings in three different stand vegetation. We compared 12 treatments and followed 120 seedlings over three growth seasons. Results: We found similar survival in soils from aspen- and spruce-dominated stands, and a greater biomass on organic layers. In addition to this, a greater mycorrhization rate was found in aspen soils but improved germination in spruce soils. The presence of Ericaceae in spruce soils was associated with lower mycorrhization but did not affect other traits. Sterilization and therefore microorganisms affected mainly the number of ectomycorrhizae and the investment in root biomass. Finally, mycorrhization and biomass were correlated, but independent from N nutrition measured in needles. Conclusions: Our results highlighted the positive effects of organic soil layers and of mycorrhization on biomass, and showed that mycorrhization was increased under aspen as compared to other stand types. Our experiment also revealed positive effects of spruce soil on fir germination and showed that fir was able to grow and survive in all conditions. Our study suggests that fir establishment is affected by belowground multi-species interactions, and therefore highlights that biotic interactions shall be taken into account to understand and predict future tree migrations in the boreal forest.