The newly identified SARS-CoV-2 has now been reported from around 185 countries with more than a million confirmed human cases including more than 120,000 deaths. The genomes of SARS-COV-2 strains isolated from different parts of the world are now available and the unique features of constituent genes and proteins need to be explored to understand the biology of the virus. Spike glycoprotein is one of the major targets to be explored because of its role during the entry of coronaviruses into host cells. We analyzed 320 whole-genome sequences and 320 spike protein sequences of SARS-CoV-2 using multiple sequence alignment. In this study, 483 unique variations have been identified among the genomes of SARS-CoV-2 including 25 nonsynonymous mutations and one deletion in the spike (S) protein. Among the 26 variations detected in S, 12 variations were located at the Nterminal domain (NTD) and 6 variations at the receptor-binding domain (RBD) which might alter the interaction of S protein with the host receptor angiotensin-converting enzyme 2 (ACE2). Besides, 22 amino acid insertions were identified in the spike protein of SARS-CoV-2 in comparison with that of SARS-CoV. Phylogenetic analyses of spike protein revealed that Bat coronavirus have a close evolutionary relationship with circulating SARS-CoV-2. The genetic variation analysis data presented in this study can help a better understanding of SARS-CoV-2 pathogenesis. Based on results reported herein, potential inhibitors against S protein can be designed by considering these variations and their impact on protein structure.

Change analysis of land use and land cover (LULC) is a technique to study the environmental degradation and to control the unplanned development. Analysis of the past changing trend of LULC along with modeling future LULC provides a combined opportunity to evaluate and guide the present and future land use policy. The southwest coastal region of Bangladesh, especially Assasuni Upazila of Satkhira District, is the most vulnerable to natural disasters and has faced notable changes in its LULC due to the combined effects of natural and anthropogenic causes. The objectives of this study are to illustrate the temporal dynamics of LULC change in Assasuni Upazila over the last 27 years (i.e., between 1989 and 2015) and also to predict future land use change using CA-ANN (cellular automata and artificial neural network) model for the year 2028. Temporal dynamics of LULC change was analyzed, employing supervised classification of multi-temporal Landsat images. Then, prediction of future LULC was carried out by CA-ANN model using MOLUSCE plugin of QGIS. The analysis of LULC change revealed that the LULC of Assasuni had changed notably during 1989 to 2015. "Bare lands" decreased by 21% being occupied by other land uses, especially by "shrimp farms." Shrimp farm area increased by 25.9% during this period, indicating a major occupational transformation from agriculture to shrimp aquaculture in the study area during the period under study. Reduction in "settlement" area revealed the trend of migration from the Upazila. The predicted LULC for the year 2028 showed that reduction in bare land area would continue and 1595.97 ha bare land would transform into shrimp farm during 2015 to 2028. Also, the impacts of the changing LULC on the livelihood of local people and migration status of the Upazila were analyzed from the data collected through focus group discussions and questionnaire surveys. The analysis revealed that the changing LULC and the occupational shift from paddy cultivation to shrimp farming were related to each other. Around 31.3% of the total respondents stated that at least one of their family members had migrated. Climate-driven southwestern coastal people usually migrate from the vulnerable rural areas towards the nearest relatively safe city due to adverse effects of natural disasters. To control the unplanned development and reduce the internal migration in Assasuni and other coastal areas, a comprehensive land use management plan was suggested that would accommodate the diversified uses of coastal lands and eventually lessen the threats to the life and livelihood of the local people.

Although many guidance documents have been developed to inform the design and operation of building water systems to ensure safe water quality, there is a lack of consensus on some topics. This study interviewed 22 subject matter experts (SMEs) to identify topics of concern for managing water quality in buildings and compared SME views with information available on these topics in 15 systematically screened important guidance documents. The study found 18 design and 11 operational topics as critical for managing water quality in buildings. No one guidance document addressed all these topics, suggesting that a compendium of available guidance is needed. SMEs most frequently recommended temperature and residual disinfectant measurements as good parameters for monitoring overall building water quality. Both SME and guidance document recommendations for temperature for controlling opportunistic pathogen growth were reasonably consistent with water heater setpoint >60 °C. However, hot water temperature recommendations varied between 50 and 55 °C for other locations (i.e., the water temperature at the tap or end of the return loop). On the contrary, recommendations for disinfectant residual levels (0.2–2.0 mg/L), flushing frequency (1–14 days), and allowable time for hot water to reach the tap (10–60 s) were not consistent. While this study was able to reconcile diverging views on some of the water quality topics, such as identifying common guidance for water heater set point to at least 60 °C, it also highlights lack of definitive guidance on other critical topics, such as residual level, flushing frequency, hot water time to tap, and the use of thermostatic mixing valves, indicating that these are significant knowledge gaps that need further investigation. The study concludes that there is a need for developing evidence-based guidance, particularly on the topics where expert opinions diverged.

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This study examines the effect of pipe characteristics and stagnation time on nitrification, disinfectant loss, and organic carbon concentrations. Pipe racks consisting of different pipe materials (chlorinated polyvinyl chloride [CPVC], cross‐linked polyethylene [PEX‐B], and copper), diameters (0.75 and 0.5 in.), and water stagnation times (1 week and 12 hr) were set up in two cities with different disinfectants (chloramine and free chlorine) and different corrosion control (orthophosphate vs. pH/alkalinity adjustment). Copper pipe material had lower residual concentrations relative to plastic pipe in both water systems. In the chloramine system, residual concentrations were lower for smaller‐diameter pipes, whereas diameter did not strongly influence residual concentration in the chlorine system. Total organic carbon (TOC) increased during stagnation in the chloramine system. Nitrification was observed in the chloramine system for stagnation times of 1 week and 12 hr, indicating that flushing as frequently as every 12 hr may not be an effective mechanism for nitrification control in building plumbing.

Opportunistic premise plumbing pathogens such as Pseudomonas aeruginosa and Naegleria fowleri are a growing concern in building water systems because of their potential risks to human health. The aim of this study was to determine the critical concentrations of P. aeruginosa and N. fowleri in water that are associated with meaningful public health risks. To determine these concentrations, a reverse quantitative microbial risk assessment (QMRA) was conducted. Environmental concentrations of P. aeruginosa and N. fowleri corresponding to the risk target of one micro-disability-adjusted life year (DALY) per person per year and 10−4 annual risks of illness were calculated for several applicable exposure scenarios. To calculate the concentration of P. aeruginosa, cleaning contact lenses with potentially contaminated tap water in the absence of an appropriate cleaning solution was considered. For N. fowleri, two exposure scenarios, recreational exposure (swimming) and nasal cleansing (via the use of a neti pot™ or similar device) were considered. The highest critical concentration for P. aeruginosa was found to be 33 CFU/L with a 95% confidence interval of (2.0, 118) for the drop exposure scenario using the 10−4 annual risk target. For N. fowleri, based on the DALY approach, critical concentrations were 0.000030 N. fowleri/L for swimming and 0.00000060 N. fowleri/L for neti pot™ use scenario. Considering heat inactivation, the critical concentration limits for P. aeruginosa using the DALY approach and the 10−4 annual risk target approach were found to be 0.55 CFU/L and 55 CFU/L, respectively. For N. fowleri, the 10−4 annual risk target approach resulted in 0.022 N. fowleri/L and the DALY approach resulted in 0.00000064 N. fowleri/L for the neti pot™ scenario. For P. aeruginosa, N50 (the median infective dose) and alpha (α) contributed the most and contact rates the least to the variability and uncertainty of the estimates for all the scenarios. For N. fowleri, N50 and contact rates contributed the most and α the least to the variability and uncertainty to calculate the concentrations for all the scenarios. The QMRA framework implemented in this research can be used to incorporate more information regarding opportunistic pathogens to inform management decisions, and to prioritize the best interventions regarding estimated reduction in infections caused by opportunistic pathogens.