Abstract:We have investigated for forest plantations in Chile the stand-level retrieval of canopy height (CH) and growing stock volume (GSV) using Airborne Laser Scanner (ALS), ALOS PALSAR and Landsat. In a two-stage up-scaling approach, ensemble regression tree models (randomForest) were used to relate a suite of ALS canopy structure indices to stand-level in situ measurements of CH and GSV for 319 stands. The retrieval of CH and GSV with ALS yielded high accuracies with R 2 s of 0.93 and 0.81, respectively. A second set of randomForest models was developed using multi-temporal ALOS PALSAR intensities and repeat-pass coherences in two polarizations as well as Landsat data as predictor and stand-level ALS based estimates of CH and GSV as response variables. At three test sites, the retrieval of CH and GSV with PALSAR/Landsat reached promising accuracies with R 2 s in the range of 0.7 to 0.85. We show that the combined use of multi-temporal PALSAR intensity, coherence and Landsat yields higher retrieval accuracies than the retrieval with any of the datasets alone. Potential limitations for the large-area application of the fusion approach included (1) the low sensitivity of ALS first/last return data to forest horizontal structure, affecting the retrieval of GSV in less managed types of forest, and (2) the dense ALS sampling required to achieve high retrieval accuracies at larger scale.

The RespiDisk platform for automated detection of multiple viral and bacterial respiratory tract infection pathogens.

Automated and robust separation of 14 l of plasma from 40l of whole blood at a purity of 99.81% ± 0.11% within 43 s is demonstrated for the hematocrit range of 20%-60% in a centrifugal microfluidic polymer disk. At high rotational frequency, red blood cells (RBCs) within whole blood are concentrated in a radial outer RBC collection chamber. Simultaneously, plasma is concentrated in a radial inner pneumatic chamber, where a defined air volume is enclosed and compressed. Subsequent reduction of the rotational frequency to not lower than 25 Hz enables rapid transfer of supernatant plasma into a plasma collection chamber, with highly suppressed resuspension of red blood cells. Disk design and the rotational protocol are optimized to make the process fast, robust, and insusceptible for undesired cell resuspension. Numerical network simulation with lumped model elements is used to predict and optimize the fluidic characteristics. Lysis of the remaining red blood cells in the purified plasma, followed by measurement of the hemoglobin concentration, was used to determine plasma purity. Due to the pneumatic actuation, no surface treatment of the fluidic cartridge or any additional external means are required, offering the possibility for low-cost mass fabrication technologies, such as injection molding or thermoforming.

In centrifugal microfluidics, dead volumes in valves downstream of mixing chambers can hardly be avoided. These dead volumes are excluded from mixing processes and hence cause a concentration gradient. Here we present a new bubble mixing concept which avoids such dead volumes. The mixing concept employs heating to create a temperature change rate (TCR) induced overpressure in the air volume downstream of mixing chambers. The main feature is an air vent with a high fluidic resistance, representing a low pass filter with respect to pressure changes. Fast temperature increase causes rapid pressure increase in downstream structures pushing the liquid from downstream channels into the mixing chamber. As air further penetrates into the mixing chamber, bubbles form, ascend due to buoyancy and mix the liquid. Slow temperature/pressure changes equilibrate through the high fluidic resistance air vent enabling sequential heating/cooling cycles to repeat the mixing process. After mixing, a complete transfer of the reaction volume into the downstream fluidic structure is possible by a rapid cooling step triggering TCR actuated valving. The new mixing concept is applied to rehydrate reagents for loop-mediated isothermal amplification (LAMP). After mixing, the reaction mix is aliquoted into several reaction chambers for geometric multiplexing. As a measure for mixing efficiency, the mean coefficient of variation (C[combining macron]V[combining macron], n = 4 LabDisks) of the time to positivity (t) of the LAMP reactions (n = 11 replicates per LabDisk) is taken. The C[combining macron]V[combining macron] of the t is reduced from 18.5% (when using standard shake mode mixing) to 3.3% (when applying TCR actuated bubble mixing). The bubble mixer has been implemented in a monolithic fashion without the need for any additional actuation besides rotation and temperature control, which are needed anyhow for the assay workflow.