Summary SARS-CoV-2 Spike protein is critical for virus infection via engagement of ACE2 1 , and is a major antibody target. Here we report chronic SARS-CoV-2 with reduced sensitivity to neutralising antibodies in an immune suppressed individual treated with convalescent plasma, generating whole genome ultradeep sequences over 23 time points spanning 101 days. Little change was observed in the overall viral population structure following two courses of remdesivir over the first 57 days. However, following convalescent plasma therapy we observed large, dynamic virus population shifts, with the emergence of a dominant viral strain bearing D796H in S2 and ΔH69/ΔV70 in the S1 N-terminal domain NTD of the Spike protein. As passively transferred serum antibodies diminished, viruses with the escape genotype diminished in frequency, before returning during a final, unsuccessful course of convalescent plasma. In vitro , the Spike escape double mutant bearing ΔH69/ΔV70 and D796H conferred modestly decreased sensitivity to convalescent plasma, whilst maintaining infectivity similar to wild type. D796H appeared to be the main contributor to decreased susceptibility but incurred an infectivity defect. The ΔH69/ΔV70 single mutant had two-fold higher infectivity compared to wild type, possibly compensating for the reduced infectivity of D796H. These data reveal strong selection on SARS-CoV-2 during convalescent plasma therapy associated with emergence of viral variants with evidence of reduced susceptibility to neutralising antibodies.

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The purpose of this study was to examine the nutritional effects on sleep using actigraphy measures. A repeated-measures, counterbalanced, cross-over study design was used to administer treatment diets to 44 adult participants. Participants served as their own control and consumed high-protein, high-fat, high-carbohydrate, and control diets. The study participants wore Motionlogger Actigraph sleep watches while consuming weighed food intakes for 4 days over four different treatment periods. Demographic and laboratory data were also analyzed. Actigraph results showed that the wake episodes and sleep latencies were significantly different when comparing the macronutrient intakes of the participants. Post hoc test results showed that high-protein diets were associated with significantly fewer (p = .03) wake episodes and high-carbohydrate diets were associated with significantly shorter (p < .01) sleep latencies than control diets. Thus, consumption of specific macronutrient intakes may have a significant influence on sleep.

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This is a PDF file of a peer-reviewed paper that has been accepted for publication. Although unedited, the content has been subjected to preliminary formatting. Nature is providing this early version of the typeset paper as a service to our authors and readers. The text and figures will undergo copyediting and a proof review before the paper is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers apply.