Currently, the Galapagos sea lion (GSL, Zalophus wollebaeki) and Galapagos fur seal (GFS, Arctocephalus galapagoensis) are among the most important endemic species for conservation in the Galapagos Archipelago. Both are classified as “Endangered” since their populations have undergone drastic declines over the last several decades. In this study we estimated the abundance of both otariids, and their population trends based using counts conducted between 2014 and 2018 in all their rookeries, and we analyzed the influence of environmental variability on pup production. The GSL population size in 2018 in the archipelago was estimated to be between 17,000 to 24,000 individuals and has increased at an average annual rate of 1% over the last five years after applying correction factors. The highest number of GSL counted in the archipelago was in 2014 followed by a population decline of 23.8% in 2015 that was associated with the El Niño event that occurred during that year. Following this event, the population increased mainly in the northern, central and southeastern rookeries. The GSL pup abundance showed a decreasing trend with the increase in intensity of the El Niño. The GFS population in 2018 was counted in 3,093 individuals and has increased at an annual rate of 3% from 2014 to 2018. A high number of GFS counted in 2014 was followed by a population decrease of 38% in 2015, mainly in the western rookeries. There was interannual population fluctuations and different growth trends among regions of the archipelago. GSL and GFS pup abundance has a strong decreasing tendency with the increase in the subthermocline temperature (ST) and the El Niño 1 + 2 index. Our results provide evidence that both species are highly vulnerable to periodic oceanographic-atmospheric events in the Galapagos Archipelago which impact prey abundance and the flow of energy in the unique Galapagos ecosystem.

There is great concern regarding the population status of the endangered Galapagos sea lion (GSL) because it has drastically decreased over the last 30 years. We determined the population size and growth trend of the GSL in the Galapagos southeastern region (SER) at three population levels based on the available census data: 1) SER (2011–2015), including 13 rookeries on the four islands San Cristóbal (SC), Española, Floreana, and Santa Fe, comprising 58% of the archipelago’s population; 2) SC (2011–2015), including five rookeries, comprising 52% of the SER population; and 3) El Malecón (2005–2015), the largest rookery on SC and in the SER (43% of the population on SC and 22% in the SER). We also analyzed the influence of environmental variability on pup abundance in these rookeries. The current GSL population size in the SER, after applying correction factors to the counts, is estimated at approximately 2300–4100 individuals and has declined at an average annual rate (ʎ) of 8.7% over the last five years. A similar trend was determined for SC but at ʎ = 1.4% during the same period. For El Malecón, a count-based population viability analysis using a diffusion approximation approach showed that the population increased from 2005 to 2015 at ʎ = 2%. The interannual variability in pup abundance was associated with anomalies in sea surface temperature linked to oceanographic-atmospheric events, which impact the abundance and availability of prey, and ultimately may determine the population’s reproductive success. Since rookeries in the SER had different population trends, management actions should be implemented based on their specific conditions, giving priority to rookeries such as El Malecón, which, despite showing a slightly increasing population trend, still faces a high risk of extinction due to anthropogenic disturbances and environmental variability that may affect its growth and survival.

This study demonstrated the usefulness of the applied approach for providing a best approximation of the timing of isotopic integration into the skull of a marine mammal, thereby reducing uncertainty in exploring historic changes in the species' feeding behavior.