Purpose Statistical Shape and Appearance Models play an important role in reducing the segmentation processing time of a vertebra and in improving results for 3D model development. Here we describe the different steps in generating a Statistical Shape Model of the second cervical vertebra (C2) and provide the shape model for general use by the scientific community. The main difficulties in its construction are the morphological complexity of the C2 and its variability in the population. Methods The input dataset is composed of manually segmented anonymized patient computerized tomography (CT) scans. The alignment of the different datasets is done with the Procrustes Alignment on surface models and then the registration is cast as a model-fitting problem using a Gaussian process. A Principal Component Analysis (PCA) based model is generated which includes the variability of the C2. Results The Statistical Shape Model (SSM) was generated using 92 CT scans. The resulting SSM was evaluated for specificity, compactness and generalization ability. The SSM of the C2 is freely available to the scientific community in Slicer (an open source software for image analysis and scientific visualization) with a module created to visualize the SSM using Statismo, a framework for statistical shape modeling. Conclusion The SSM of the vertebra allows the shape variability of the C2 to be represented. Moreover, the SSM will enable semi-automatic segmentation and 3D model generation of the vertebra, which would greatly benefit surgery planning.

Abstract:To enable fast reliable feature matching or tracking in scenes, features need to be discrete and meaningful, and hence edge or corner features, commonly called interest points are often used for this purpose. Experimental research has illustrated that biological vision systems use neuronal circuits to extract particular features such as edges or corners from visual scenes. Inspired by this biological behaviour, this paper proposes a biologically inspired spiking neural network for the purpose of image feature extraction. Standard digital images are processed and converted to spikes in a manner similar to the processing that transforms light into spikes in the retina. Using a hierarchical spiking network, various types of biologically inspired receptive fields are used to extract progressively complex image features. The performance of the network is assessed by examining the repeatability of extracted features with visual results presented using both synthetic and real images.

Many robots use range data to obtain an almost 3dimensional description of their environment. Feature driven segmentation of range images has been primarily used for 3D object recognition, and hence the accuracy of the detected features is a prominent issue. Inspired by the structure and behaviour of the human visual system, we present an approach to feature extraction in range data using spiking neural networks and a biologically plausible hexagonal pixel arrangement. Standard digital images are converted into a hexagonal pixel representation and then processed using a spiking neural network with hexagonal shaped receptive fields; this approach is a step towards developing a robotic eye that closely mimics the human eye. The performance is compared with receptive fields implemented on standard rectangular images. Results illustrate that, using hexagonally shaped receptive fields, performance is improved over standard rectangular shaped receptive fields.

Inspired by the structure and behaviour of the human visual system, we present an approach to edge detection using spiking neural networks and a biologically plausible hexagonal pixel arrangement. Standard digital images are converted into a hexagonal pixel representation and then processed using a spiking neural network with hexagonal shaped receptive fields. The performance is compared with receptive fields implemented on standard rectangular images. Results illustrate that, using hexagonal shaped receptive fields, performance is improved over standard rectangular shaped receptive fields

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