Glucose-dependent insulinotropic polypeptide receptor (GIPR), a member of family B of the G-protein coupled receptors, is a potential therapeutic target for which discovery of nonpeptide ligands is highly desirable. Structure-activity relationship studies indicated that the N-terminal part of glucose-dependent insulinotropic polypeptide (GIP) is crucial for biological activity. Here, we aimed at identification of residues in the GIPR involved in functional interaction with N-terminal moiety of GIP. A homology model of the transmembrane core of GIPR was constructed, whereas a three-dimensional model of the complex formed between GIP and the N-terminal extracellular domain of GIPR was taken from the crystal structure. The latter complex was docked to the transmembrane domains of GIPR, allowing in silico identification of putative residues of the agonist binding/activation site. All mutants were expressed at the surface of human embryonic kidney 293 cells as indicated by flow cytometry and confocal microscopy analysis of fluorescent GIP binding. Mutation of residues Arg183, Arg190, Arg300, and Phe357 caused shifts of 76-, 71-, 42-, and 16-fold in the potency to induce cAMP formation, respectively. Further characterization of these mutants, including tests with alanine-substituted GIP analogs, were in agreement with interaction of Glu3 in GIP with Arg183 in GIPR. Furthermore, they strongly supported a binding mode of GIP to GIPR in which the N-terminal moiety of GIP was sited within transmembrane helices (TMH) 2, 3, 5, and 6 with biologically crucial Tyr1 interacting with Gln224 (TMH3), Arg300 (TMH5), and Phe357 (TMH6). These data represent an important step toward understanding activation of GIPR by GIP, which should facilitate the rational design of therapeutic agents.Glucose-dependent insulinotropic polypeptide (GIP; also known as gastric inhibitory polypeptide) is a 42-residue hormone released by the enteroendocrine K cells lining the proximal duodenum (Jörnvall et al., 1981;Moody et al., 1984). GIP stimulates insulin secretion from pancreatic -cells after ingestion of nutrients. The peptide has a very short half-life in the blood because it is vulnerable to degradation by the ubiquitous enzyme dipeptidyl peptidase IV (Mentlein et al., 1993). GIP, along with its sister incretin hormone glucagonlike peptide 1, has been shown to account for 50 to 70% of postprandial insulin secretion. The incretin effect is strictly glucose-dependent and is essential for the maintenance of glucose homeostasis. GIP further enhances its glucose-lowering effects by the inhibition of hepatic glucose production and the stimulation of proinsulin gene transcription and translation. Because of its hypoglycemic and hypolipidemic effects (Brown, 1974;Baggio and Drucker, 2007), GIP and its receptor (GIPR) are of high pharmacological interest, especially in identification and design of new molecules for the treatment of diabetes mellitus and obesity (Kieffer, 2003). The expression of GIPR in different organs and systems such as stoma...