Analysis of the reaction between 2'-deoxycytidine and 4-oxo-2-nonenal by LC/MS revealed the presence of three major products (adducts A(1), A(2), and B; [M + H](+) = 364). Adducts A(1) and A(2) were isomeric, and each dehydrated to form adduct B. The structure of adduct B was shown by LC/MS and NMR spectroscopy to be an etheno-2'-deoxycytidine adduct 1' '-[1-(2'-deoxy-beta-d-erythro-pentofuranosyl)-1H-imidazo[2,1-c]pyrimidin-2-oxo-4-yl]heptane-2' '-one. A time course experiment performed at 65 degrees C (pH 5-8) showed that the transformation of both A(1) and A(2) was pH-dependent. In acidic conditions, adducts A(1) and A(2) dehydrated primarily to adduct B. In contrast, in basic conditions, adducts A(1) and A(2) hydrolyzed primarily to dCyd. The data are consistent with adducts A(1) and A(2) being substituted ethano adducts that dehydrate to adduct B, a substituted 3,N(4)-etheno-2'-deoxycytidine adduct.

Monitoring chemical reactions is the key to controlling chemical processes where NMR can provide support. High-field NMR gives detailed structural information on chemical compounds and reactions; however, it is expensive and complex to operate. Conversely, low-field NMR instruments are simple and relatively inexpensive alternatives. While low-field NMR does not provide the detailed information as the high-field instruments as a result of their smaller chemical shift dispersion and the complex secondary coupling, it remains of practical value as a process analytical technology (PAT) tool and is complimentary to other established methods, such as ReactIR and Raman spectroscopy. We have tested a picoSpin-45 (currently under ThermoFisher Scientific) benchtop NMR instrument to monitor three types of reactions by 1D (1) H NMR: a Fischer esterification, a Suzuki cross-coupling, and the formation of an oxime. The Fischer esterification is a relatively simple reaction run at high concentration and served as proof of concept. The Suzuki coupling is an example of a more complex, commonly used reaction involving overlapping signals. Finally, the oxime formation involved a reaction in two phases that cannot be monitored by other PAT tools. Here, we discuss the pros and cons of monitoring these reactions at a low-field of 45 MHz by 1D (1) H NMR. Copyright © 2015 John Wiley & Sons, Ltd.

Cellular oxidative stress causes increased lipid peroxidation with the concomitant formation of DNA and protein reactive bifunctional electrophiles. Glutathione (GSH) detoxifies these bifunctional electrophiles by forming GSH adducts. Several years ago we discovered 4-oxo-2(E)-nonenal (ONE) as a major bifunctional electrophile derived from lipid hydroperoxides. We have now made the unexpected discovery that glutathione-S-transferase (GST)-mediated GSH addition to ONE occurs primarily to C-1 of the alpha,beta-unsaturated ketone rather than to C-3 of the alpha,beta-unsaturated aldehyde. The resulting intermediate rapidly undergoes two intramolecular cyclizations followed by two separate dehydration reactions to provide an unusual thiadiazabicyclo-ONE-GSH adduct (TOG). Quantification of intracellular TOG was performed using stable isotope dilution liquid chromatography-multiple reaction monitoring/mass spectrometry after the addition of ONE to cells or as an endogenously derived adduct during peroxide-induced oxidative stress. TOG represents the first member of a new class of thiadiazabicyclo GSH adducts that are formed through GST-mediated addition of GSH to reactive intermediates containing the ONE motif during intracellular oxidative stress. ONE formation can potentially result from free radical pathways as well as cyclooxygenase- and lipoxygenase-mediated pathways. Its aldo-keto reductase-mediated reduction product, 4-oxo-2(E)-nonenol (ONO), was also formed and converted to GSH adducts similar to those formed by 4-hydroxy-2(E)-nonenal (HNE). ONO is isomeric with HNE; therefore, protein and peptide adducts ascribed to arise solely from reactions with endogenous HNE will need to be re-appraised.

The accumulation of metastable intermediates resulting from the incomplete hydrolysis of phosphoryl trichloride-containing mixtures carries the risk of latent exothermic events. Significant accumulation of two P-Cl species containing reactive phosphorus-chlorine bonds was detected spectroscopically ( 31 P NMR) during inverse quench of POCl 3 -MeCN mixtures under typical literature conditions. The dominant reactive intermediate was unequivocally assigned as phosphorodichloridic acid (X-ray, 31 P NMR). Quantitative 31 P NMR time-course experiments allowed for the determination of kinetic parameters of POCl 3 hydrolysis under synthetically relevant concentration and temperature conditions in batch settings. Development of an in situ Raman method allowed to further expand these studies to semibatch conditions under different pH regimes. Furthermore, we hereby describe an in situ Raman method suitable to ascertain completeness of the quench for large-scale preparations involving POCl 3 . These analytical techniques can be supported by differential scanning calorimetry (DSC) and accelerated rate calorimetry (ARC) in order to confirm absence of reactive species.