Studies of spatial genetic structure (SGS) are important because they offer detailed insights into historical demographic and evolutionary processes and provide important information regarding species conservation and management. Pinus engelmannii and P. leiophylla var. leiophylla are two important timber tree species in Mexico, covering about 2.5 and 1.9 million hectares, respectively. However, studies in relation to population genetics are unfortunately scant. The aim of this research was to use amplified fragment length polymorphisms (AFLP) analysis to identify potential differences in spatial genetic structure within and among seven Pinus engelmannii and nine P. leiophylla var. leiophylla seed stands in Durango, Mexico. Within the 16 seed stands of the two tested pine species, no significant SGS was detected, although SGS was detected among the seed stands. We concluded that the collection of seed in only some seed stands should not significantly alter the degree of genetic differentiation within the (collected) seed. Distances between seed orchards and pollen propagators of more than 24 km for P. engelmannii and 7 km for P. leiophylla may be sufficient to limit contamination. Finally, local seeds should be used for (re)forestation.
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