Chromosomes of the South American geckos Gymnodactylus amarali and G. geckoides from open and dry areas of the Cerrado and Caatinga biomes in Brazil, respectively, were studied for the first time, after conventional and AgNOR staining, CBG- and RBG-banding, and FISH with telomeric sequences. Comparative analyses between the karyotypes of open areas and the previously studied Atlantic forest species G. darwinii were also performed. The chromosomal polymorphisms detected in populations of G. amarali from the states of Goiás and Tocantins is the result of centric fusions (2n = 38, 39 and 40), suggesting a differentiation from a 2n = 40 ancestral karyotype and the presence of supernumerary chromosomes. The CBG- and RBG-banding patterns of the Bs are described. G. geckoides has 40 chromosomes with gradually decreasing sizes, but it is distinct from the 2n = 40 karyotypes of G. amarali and G. darwinii due to occurrence of pericentric inversions or centromere repositioning. NOR location seems to be a marker for Gymnodactylus, as G. amarali and G. geckoides share a medium-sized subtelocentric NOR-bearing pair, while G. darwinii has NORs at the secondary constriction of the long arm of pair 1. The comparative analyses indicate a non-random nature of the Robertsonian rearrangements in the genus Gymnodactylus.

The karyotype of Amphisbaena ridleyi, an endemic species of the archipelago of Fernando de Noronha, in State of Pernambuco, Brazil, is described after conventional staining, Ag-NOR impregnation and fluorescence in situ hybridization (FISH) with a telomeric probe. The diploid number is 46, with nine pairs of macrochromosomes (three metacentrics, four subtelocentrics and two acrocentrics) and 14 pairs of microchromosomes. The Ag-NOR is located in the telomeric region of the long arm of metacentric chromosome 2 and FISH revealed signals only in the telomeric region of all chromosomes. Further cytogenetic data on other amphisbaenians as well as a robust phylogenetic hypothesis of this clade is needed in order to understand the evolutionary changes on amphisbaenian karyotypes.

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Amapasaurus is a monotypic genus of forest lizards never accessed molecularly and, based on morphological similarities, suggested to be closely related to species of the former Leposoma parietale group Ruibal 1952, currently in the genus Loxopholis Cope 1869. Two other species, formerly allocated in Arthrosaura (A. guianensis and A. hoogmoedi), were tentatively moved to Loxopholis in an extensive molecular revision of Gymnophthalmoidea. Here we add mitochondrial and nuclear sequence data (12S, cyt b, ND4, c-mos and NT3) of Amapasaurus to previously published and new data of all Ecpleopodini genera (except for Adercosaurus), in order to test: i) the close relationship between Amapasaurus and Loxopholis and ii) the position of Loxopholis guianensis and Loxopholis hoogmoedi with three different phylogenetic methods, expanding the knowledge on the current taxonomy of Ecpleopodini. Concatenated analyses of mitochondrial and nuclear data (2303 bp) under Bayesian Inference, Maximum Likelihood and Maximum Parsimony methods recovered a strongly supported sister relationship between Amapasaurus tetradactylus Cunha 1970 and species of Loxopholis. Genetic divergence between Amapasaurus and this assemblage of Loxopholis is high in both mitochondrial (~18% for cyt b) and nuclear (~12% for c-mos) regions, supporting its generic distinctiveness. Differing from the current taxonomy of the Ecpleopodini tribe, our analyses recovered Lo. guianensis and Lo. hoogmoedi as a distinct clade that is sister to all other Loxopholis plus Amapasaurus. Supplemented by external and hemipenial morphology data available from the literature along with DNA sequences, we restrict Loxopholis to the species of the former parietale group of Leposoma and describe a new genus to allocate Lo. guianensis and Lo. hoogmoedi.

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