1. Relationships between fish and their habitat over whole geographic regions, which are evident from studies of many streams and species, can improve understanding of lotic communities and provide reliable management tools. Nevertheless, most habitat preference studies have been based on single sites, and confined to small streams and to game species. 2. Regional habitat preference models, based on local velocity, depth and roughness, were developed for twenty‐four species and their size classes commonly found in large European streams. Fish surveys were conducted in six large streams in southern France over an 8‐year period. To limit the influences of habitat variables other than those studied, we estimated fish preferences within each survey and averaged this information across surveys. Preferences were fitted with confidence intervals and their sensitivity to field uncertainty was evaluated. 3. Most species and size classes had significant preferences for local habitat conditions which were consistent across the region. Habitat preferences predominant in the region overall were not always observed at any one site, but habitat conditions preferred on average in the region were never actually avoided locally. These results support the use of regional preference models for fish and the development of similar models for other lotic groups whose sensitivity to local habitat conditions has been reported elsewhere.

We report mercury (Hg) mass-dependent isotope fractionation (MDF) and mass-independent isotope fractionation (MIF) in hair samples of the Bolivian Esse Ejjas native people and in several tropical fish species that constitute their daily diet. MDF with δ202Hg ranging from −0.40 to −0.92 ‰ for fish and +1.04 to +1.42 ‰ for hair was observed. Hair samples of native people with a fish-dominated diet are enriched by +2.0 ± 0.2 ‰ in δ202Hg relative to the fish consumed. Both odd Hg isotopes, 199Hg and 201Hg, display MIF in fish (from −0.14 to +0.38 ‰ for Δ201Hg and from −0.09 to +0.55 ‰ for Δ199Hg) and in hair (from +0.12 to +0.66 ‰ for Δ201Hg and from +0.14 to +0.81 ‰ for Δ199Hg). No significant difference in MIF anomalies is observed between Hg in fish and in human hair, suggesting that the anomalies act as conservative source tracers between upper trophic levels of the tropical food chain. Fish Hg MIF anomalies are 10-fold lower than those published for fish species from midlatitude lakes. Grouping all Amazonian fish species per location shows that Δ199Hg:Δ201Hg regression slopes for the clear water Itenez River basin (0.95 ± 0.08) are significantly lower than those for the white water Beni River basin (1.28 ± 0.12). Assuming that the observed MIF originates from aquatic photoreactions, we calculated limited photodemethylation of monomethylmercury (MMHg) in the Beni River floodplains and insignificant photodemethylation in the Itenez River floodplains. This is possibly related to lower residence times of MMHg in the Itenez compared to the Beni River floodplains. Finally, a significantly negative Δ201Hg of −0.14 ‰ in Beni River fish suggests that the inorganic Hg precursor to the MMHg that bioaccumulates up the food chain defines an ecosystem specific non-zero Δ201Hg baseline. Calculation of photodemethylation intensities from Hg or MMHg MIF, therefore, requires a baseline correction.

International audienceKnowledge of fish migration is a prerequisite to sustainable fisheries management and preservation, especially in large international river basins. In particular, understanding whether a migratory lifestyle is compulsory or facultative, and whether adults home to their natal geographic area is paramount to fully appraise disruptions of longitudinal connectivity resulting from damming.In the Amazon, the large migratory catfishes of the Brachyplatystoma genus are apex predators of considerable interest for fisheries. They are believed to use the entire length of the basin to perform their life cycle, with hypothesized homing behaviours. Here, we tested these hypotheses, using the emblematic B. rousseauxii as a model species.We sampled adults close to major breeding areas in the Amazon basin (upper Madeira and upper Amazonas) and assessed their lifetime movements by measuring variations in 87Sr/86Sr along transverse sections of their otoliths (ear stones) using laser ablation multicollector mass spectrometry (LA-MC-ICPMS).We demonstrate that larvae migrate downstream from the Andean piedmont to the lower Amazon, where they grow over a protracted period before migrating upstream as adults. Contrary to prevailing inferences, not all fish spend their nursery stages in the Amazon estuary. By contrast, the passage in the lower or central Amazon seems an obligate part of the life cycle. We further evidence that most adults home to their natal geographic area within the Madeira sub-basin. Such long-distance natal homing is exceptional in purely freshwater fishes.Synthesis and applications. By using otolith microchemistry, we were able to demonstrate a seemingly compulsory basin-wide migratory life cycle of large Amazonian catfishes. This makes them the organisms performing the longest migrations (>8000 km) in fresh waters. This exceptional life history is already jeopardized by two dams recently built in the Madeira River, which block a major migration route and access to a substantial part of their spawning grounds. Major impacts can be anticipated from the current and forthcoming hydroelectric development in the Amazon basin, not only on the populations and fisheries of this apex predator, but also on Amazonian food webs through trophic cascades

1. One current approach to the prediction of community characteristics is to use models of key local‐scale processes (e.g. niche dimensions) affecting individuals and to estimate the effects of these attributes over larger scales. We tested this approach, focusing on how the hydraulic habitat structures fluvial fish communities. 2. We used a recent statistical habitat model to predict fish community characteristics in eleven reaches in the Rhône river basin in France. Predictions were made ‘blindly’ since most reaches were not used to calibrate the model. The model reflects species preferences for local hydraulics. We made predictions of the fish community from the local hydraulic conditions found in the reaches under low flow conditions. The overall abundance and the relative abundance (both as indices) of fish species, specific size classes and species traits (i.e. reproductive, trophic, morphological and others) were predicted. We summarized our predictions of the relative abundance of species as two ‘community structure indices’ using Principal Component Analysis. 3. Our predictions from low‐flow hydraulics were compared with long‐term observations of fish communities. The relative abundance of species actually observed depended largely on zoogeographic factors within the Rhône basin which could not be predicted by the model. The model predicted 13% of the variance in the indices of relative abundance at the species level and 23% of this variance at the trait level for all zoogeographic regions combined. However, when focused on reaches within a geographic region, the model explained up to 47% of the same variance. Therefore, geographic regions act as ‘filters’ on the relative abundance of species, but hydraulics do affect fish communities within a given geographical context. 4. For the synthetic ‘community structure indices’, we obtained good predictions from hydraulics independently of the geographical context (variance explained up to 95%). These indices were linked to simple key hydraulic characteristics of river reaches (Froude and/or Reynolds number). The indices enabled interpretations of the links between hydraulics, geomorphology, discharge and community patterns. These links were consistent with existing knowledge of species and their traits. 5. In addition to the above validations, the habitat model partly explained the observed effects of impoundment on fish communities. 6. The present results show that stream hydraulics strongly impact fish community structure. Consequently, our findings confirm that community characteristics can be predicted using models of the local‐scale habitat requirements of the species forming the community.

Morphological correlates of diet were examined in 48 species of freshwater fishes from floodplain lakes in the central part of the Mamore´River (Bolivian Amazon). The species were classified, according to the percentage occurrence of seven food items, into eight broad trophic categories: mud feeders, algivores, herbivores, terrestrial invertivores and omnivores, carnivores, zooplanktivores, aquatic invertivores and piscivores. There were significant relationships between the diet and morphology of the fishes even when the effect of taxonomical relatedness between species was eliminated. Relative gut length was the main morphological variable used to order species on a carnivore to mud feeder gradient. Standard length and head and mouth size were the morphological variables most closely associated with prey size. Mud feeder, algivore and piscivore species appeared as the most dietary and morphologically specialized. These results support both the hypotheses that species morphology influences the diet and that morphological similarity is conserved even in comparison with taxonomically unrelated species.

the amazon Basin is an unquestionable biodiversity hotspot, containing the highest freshwater biodiversity on earth and facing off a recent increase in anthropogenic threats. The current knowledge on the spatial distribution of the freshwater fish species is greatly deficient in this basin, preventing a comprehensive understanding of this hyper-diverse ecosystem as a whole. Filling this gap was the priority of a transnational collaborative project, i.e. the AmazonFish project -https://www.amazon-fish.com/. Relying on the outputs of this project, we provide the most complete fish species distribution records covering the whole Amazon drainage. The database, including 2,406 validated freshwater native fish species, 232,936 georeferenced records, results from an extensive survey of species distribution including 590 different sources (e.g. published articles, grey literature, online biodiversity databases and scientific collections from museums and universities worldwide) and field expeditions conducted during the project. This database, delivered at both georeferenced localities (21,500 localities) and sub-drainages grains (144 units), represents a highly valuable source of information for further studies on freshwater fish biodiversity, biogeography and conservation.Scientific Data | (2020) 7:96 | https://doi.collections from Peru 25,26 and by initiating sampling campaigns in detected gaps in Colombia, Peru and Brazil. All these spatial gaps in the database will also be prioritized in future updates through literature and web-based sources checking. Researchers holding fish distribution data from any of the current gaps or under-sampled areas (Fig. 2) and that wish to share these data are welcome to join the project. This information will be included with the complete source, after validation, in the next update of the database.

The distribution and the diet of 28 fish species were evaluated, during the dry season, in 12 streams of the Upper Beni watershed (Amazon basin, Bolivia). The 12 streams were of similar size (stream width and water depth) but situated on a gradient of altitude in the Andean and sub-Andean areas. The environmental conditions in the stream changed in relation to the altitude. As altitude decreased, slope and water velocity also decreased, while temperature, conductivity, pH and the proportion of pools increased. Although the diets of the species were mainly based on two aquatic autochthonous food resources, invertebrates and sediment, species were classified into five trophic guilds: detritivores, algivores, piscivores, invertivores-omnivores and aquatic specialist invertivores. In all streams invertivores dominated or co-dominated with detritivores. The trophic structure of the assemblages, however, changed in relation to the environmental gradient. The fish species richness increased and the trophic composition became more diverse at lower altitudes, when slope decreased and temperature increased. At the same time, the relative number of invertivore species decreased, whereas the relative number of detritivore, algivore and piscivore species increased. Decreasing altitude appeared to play a role similar to increasing stream size along the longitudinal gradient. This could be explained by geomorphological and temperature variations that may generate environmental conditions favourable to an increase of productivity.

Morphological correlates of diet were sought among 18 species of distantly related freshwater fishes from Guinea (West Africa). With regard to the percentage occurrence of six food items, the studied species could be classified into four broad trophic categories reflecting what was eaten and where: detritivores, piscivores, surface feeders and benthic invertivores. Detrivory was associated with a high relative gut length and eyes in a dorsal position; piscivory with large body and mouth size; surface feeding with a dorsally orientated mouth; and benthic invertivory with eyes in a lateral position and small relative gut length. Similarity in diet and in morphology were both significantly correlated with taxonomic relatedness. Nevertheless, when taxonomic relatedness was accounted for, the relationship between observed similarity in diet and similarity in diet predicted from morphology was still significant. This result leads to the conclusion that species having similar diet tend to converge for some morphological attributes. 1999 The Fisheries Society of the British Isles