Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species’ area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.

Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tree Diversity Network (ATDN). Utilizing a simple defining metric of at least half of the trees ≥ 10 cm diameter belonging to one species, we found only a few occurrences of monodominance in Amazonia, and the phenomenon was not significantly linked to previously hypothesized life history traits such wood density, seed mass, ectomycorrhizal associations, or Rhizobium nodulation. In our analysis, coppicing (the formation of sprouts at the base of the tree or on roots) was the only trait significantly linked to monodominance. While at specific locales coppicing or ectomycorrhizal associations may confer a considerable advantage to a tree species and lead to its monodominance, very few species have these traits. Mining of the ATDN dataset suggests that monodominance is quite rare in Amazonia, and may be linked primarily to edaphic factors.

Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia is best approximated by a logseries with aggregated individuals, where aggregation increases with rarity. By averaging several methods to estimate total richness, we confirm that over 15,000 tree species are expected to occur in Amazonia. We also show that using ten times the number of plots would result in an increase to just ~50% of those 15,000 estimated species. To get a more complete sample of all tree species, rigorous field campaigns may be needed but the number of trees in Amazonia will remain an estimate for years to come.

The Balbina hydropower dam in the Central Amazon basin, established in the Uatumã River in the 1980s, is emblematic for its socio‐environmental disaster. Its environmental impacts go far beyond the reservoir and dam, however, affecting the floodplain forests (igapó) in the downstream area (dam shadow), which have been assessed using a transdisciplinary research approach, synthesized in this review. Floodplain tree species are adapted to a regular and predictable flood pulse, with high‐ and low‐water periods occurring during the year. This was severely affected by the operation of the Balbina dam, which caused the suppression of both the aquatic phase at higher floodplain elevations and the terrestrial phase at lower floodplain elevations (termed the ‘sandwich effect’). During the period of construction and reservoir fill, large‐scale mortality already occurred in the floodplains of the dam shadow as a result of reduced stream flow, in synergy with severe drought conditions induced by El Niño events, causing hydraulic failure and making floodplains vulnerable to wildfires. During the operational period of the dam, permanent flooding conditions at low topographical elevations resulted in massive tree mortality. So far, 12% of the igapó forests have died along a downstream river stretch of more than 125 km. As a result of flood suppression at the highest elevations, an encroachment of secondary tree species from upland (terra firme) forests occurred. More than 35 years after the implementation of the Balbina dam, the downstream impacts caused massive losses of macrohabitats, ecosystem services, and diversity of flood‐adapted tree species, probably cascading down to the entire food web, which must be considered in conservation management. These findings are discussed critically, emphasizing the urgent need for the Brazilian environmental regulatory agencies to incorporate downstream impacts in the environmental assessments of several dam projects planned for the Amazon region.

The construction of hydroelectric dams causes changes in the diversity and floristic composition of floodplain forests due to the irregularity of the hydrological regime in rivers downstream from the dams. In the Amazon Basin, plans for the construction of dams are threatening the igapós, forests flooded by blackwater rivers. In these floodplains, the distribution of tree species is synchronized with periodic flood events of the topographic gradient. Previous studies on the Balbina Dam show an altered flood pulse downstream. This work discusses the potential long-term impacts on the diversity and floristic composition of an igapó downstream of the dam (Uatumã River) and compares it with an area unaffected by the dam (Abacate River). An evaluation of the vegetation strata-adults, saplings, and seedlings-showed that for all strata, diversity was greater in the high igapó (higher topographies) in the Uatumã area. This may be due to the near-total absence of flooding in the high igapó and to the extent of flooding in the low igapó (low topographies). Thus, in the Uatumã area, seeds of species typical of flooded areas cannot reach the high igapó by water and, thus, tend to be replaced by upland forest species (mainly seedlings). In the low igapó, the typical species have difficulty establishing. Therefore, the Uatumã vegetation forms two different communities, which does not occur in the Abacate area. These effects of the dam led to irreversible changes in the diversity and floristic composition across all strata throughout the entire topography in the downstream region.

The flood pulse of black water rivers in the Amazon basin determines the composition of species along the flood gradient in igapó forests. The Balbina dam, built on the Uatumã River, has altered the flood pulse and caused changes in the floristic composition of adult trees throughout the downstream area. There is a lack of studies on how communities of seedlings in igapó forests respond to changes in the flood pulse. This study investigates the response of seedling communities in the igapó forest downstream the Balbina dam and compares it with two pristine areas. The areas were sampled with transects of 1x25 m within 36 plots (25x25 m) along the flood gradient. Richness and dominance were calculated by simple regression and ordination analyses. The pristine areas had the same pattern of richness, dominance and genera distribution along the flood gradient. However, the affected Uatumã area formed different groups of genera by NMDS analysis, which divided them along the flood gradient with significantly increased dominance of three genera. The insertion of the Balbina dam resulted a loss of lateral and longitudinal connectivity for the Uatumã River, and the alteration to seedling communities may alter the future landscape of downstream igapó forests.

The rhizomatous Cyperus giganteus, abundant in the Pantanal wetland, can dominate extense floodable areas as monodominant communities. The Jacadigo lake has a large area of C. giganteus, where we performed an evaluation on community structure during two months in 2010, before it was hit by a wildfire which top-killed the vegetation, compared to ten months post-fire. We utilized 40 plots of 1m × 1m, along permanent trails, assessing two strata: the upper, near the inflorescence of adult plants, and the lower, close to the water level. Our results show that fire does not affect dominance of C. giganteus, as it maintained the same cover as before fire; species richness is not much altered either -28 before fire and 34 thereafter. Fire changed the floristic composition, due to the annual variation of species and the ability of some plants to colonize gaps and to regrow after fire from underground organs and seeds. The stratification of the vegetation with characteristic species of upper and lower strata was similar after fire.Keywords: Cyperaceae, floating meadow, diversity, Pantanal, plant succession. Efeito do fogo sobre uma comunidade monodominante de Cyperus giganteusVahl em uma área úmida neotropical ResumoA planta rizomatosa Cyperus giganteus, encontrada no Pantanal, pode dominar extensas áreas inundáveis, formando uma comunidade monodominante chamada localmente de pirizal. A lagoa do Jacadigo, situada na sub-região de Nabileque, possui uma extensa área de pirizal onde foi realizada uma avaliação na estrutura da vegetação durante dois meses no período de 2010, antes de ser atingida por um incêndio que causou perda da cobertura aérea da vegetação e foi comparada com 10 meses de avaliação pós-fogo. Com indicações na literatura de que o rizoma da planta pode favorecer a espécie através de rebrotamento após um incêndio, o objetivo deste trabalho foi avaliar as variações na estrutura da vegetação de pirizal após um evento de fogo. Foram utilizadas 40 parcelas não fixas de 1m × 1m e alocadas sistematicamente através de trilhas avaliando dois estratos: o superior, próximo a inflorescência dos adultos e o inferior, próximo a lâmina d'água. Nos dois meses logo após o fogo, devido ao tamanho reduzido nos indivíduos de C. giganteus foi avaliado apenas um estrato denominado total. Os resultados mostram que o fogo não afeta a dominância de C. giganteus, que se mantém na mesma faixa de cobertura do período anterior ao fogo; a riqueza de espécies não é alterada, 28 no período anterior ao fogo e 34 no período posterior. Após o incêndio, a estrutura da comunidade sofre alteração na composição florística, devido a mudança anual de espécies e a capacidade que certas plantas possuem em colonizar clareiras e rebrotar após o fogo por meio de órgãos subterrâneos e sementes. A estratificação da vegetação com espécies características de estrato superior e inferior se manteve após o fogo, porém com diferença menos acentuada entre as espécies.Palavras-chave: Cyperaceae, baceiro, diversidade, Pantanal, sucessão vegetal.

The Brazilian Pantanal is an extensive wetland with heterogeneous habitats, primarily due to the riverfloodplain system and plants with differential adaptations and reproductive strategies. Factors such as altitude, distance among plant formations, and flood pulse must be considered to better understand its diversity. Aiming to assess the influence of biogeographic patterns in this system, we analyzed the floristic composition of six areas along the Paraguay River, including residual relieves, verifying the pattern of similarity, and effects of distance and altitude. We recorded 356 species in 87 families, mostly perennial (75%), and some annuals (15%) and pluriannuals (5%). Herbaceous plants were the most represented (48%), followed by arboreal (23%), shrubby (15%) and epiphytic (14%) habits, only 12% being endemic to Brazil. The studied areas showed low floristic similarity, but higher resemblance of species between neighboring areas, and no relation with altitude. The upper Paraguay River is diverse, with high spatial variability of species, predominantly perennial. The river-floodplain connectivity may be a determinant factor in species richness and occurrence of endemic species.